Microbial DNA Analysis in the Field Using a Biological Extraction Field Kit and a Field qPCR Unit

As quantitative PCR (qPCR) is adopted more widely across industries, the capacity to extract and analyze DNA in remote settings without logistical hurdles is becoming essential. One clear example is the need for straightforward tools to quantify contaminant-degrading bacteria at remote sites affected by train derailments or petroleum releases, enabling timely assessment of risk and environmental impact. To reliably achieve this, the processes must be portable and lightweight, user-friendly for non-scientists, resistant to contamination, and capable of delivering rapid results while still maintaining rigorous quality control. Although options for both nucleic acid extraction and qPCR analysis outside of the laboratory have existed for years, only recently have advances in technology enabled the development of field-deployable systems capable of reliable and accurate performance. In this study, we demonstrate the use of a field DNA extraction kit coupled with portable qPCR instruments under realistic environmental conditions. Field trials conducted at ambient outdoor temperatures of approximately 30 °C demonstrated DNA yields and amplification efficiencies comparable to those obtained in controlled laboratory settings. Importantly, results obtained in the field demonstrated equivalent sensitivity and reproducibility, confirming that portable workflows can provide high-quality data without the need for conventional laboratory infrastructure. These findings highlight the potential for decentralized molecular analyses that expand the reach of qPCR into remote and resource-limited settings while maintaining the accuracy and reliability required for decision-making.

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Publication Details

Journal
Journal of Visualized Experiments
Published
2026-01-02
DOI
https://doi.org/10.3791/69713
Primary Topic
Indoor Air Quality and Microbial Exposure
Type
article
Field-Weighted Citation Impact
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article

Microbial DNA Analysis in the Field Using a Biological Extraction Field Kit and a Field qPCR Unit

Adam M. Partin, Dora Taggart, Sam Rosolina, Charles Slater
Journal of Visualized Experiments
Indoor Air Quality and Microbial Exposure
article

Microbial DNA Analysis in the Field Using a Biological Extraction Field Kit and a Field qPCR Unit

Adam M. Partin, Dora Taggart, Sam Rosolina, Charles Slater
article en

Abstract

As quantitative PCR (qPCR) is adopted more widely across industries, the capacity to extract and analyze DNA in remote settings without logistical hurdles is becoming essential. One clear example is the need for straightforward tools to quantify contaminant-degrading bacteria at remote sites affected by train derailments or petroleum releases, enabling timely assessment of risk and environmental impact. To reliably achieve this, the processes must be portable and lightweight, user-friendly for non-scientists, resistant to contamination, and capable of delivering rapid results while still maintaining rigorous quality control. Although options for both nucleic acid extraction and qPCR analysis outside of the laboratory have existed for years, only recently have advances in technology enabled the development of field-deployable systems capable of reliable and accurate performance. In this study, we demonstrate the use of a field DNA extraction kit coupled with portable qPCR instruments under realistic environmental conditions. Field trials conducted at ambient outdoor temperatures of approximately 30 °C demonstrated DNA yields and amplification efficiencies comparable to those obtained in controlled laboratory settings. Importantly, results obtained in the field demonstrated equivalent sensitivity and reproducibility, confirming that portable workflows can provide high-quality data without the need for conventional laboratory infrastructure. These findings highlight the potential for decentralized molecular analyses that expand the reach of qPCR into remote and resource-limited settings while maintaining the accuracy and reliability required for decision-making.

Journal of Visualized Experiments(227)
Microbial Insights (United States) (US)
Industry, innovation and infrastructure
Openalex Percentile: Top 99%
Indoor Air Quality and Microbial Exposure
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Microbial DNA Analysis in the Field Using a Biological Extraction Field Kit and a Field qPCR Unit — Adam M. Partin, Dora Taggart, et al. · Journal of Visualized Experiments (2026) | TGRS Research Map | TGRS