Acoustically seeded fabrication of a DNA tesseract into a conductive wire

Assembly of DNA nanostructures to sub-millimetre scales is expected to have significant potential for applications in materials science and medicine. One approach to control nanostructure growth is through using acoustic waves to create pressure nodes for clustering. Here, we report a facet-based underlying DNA nanostructure architecture with structural and stability characteristics ideal for acoustic patterning. The architecture comprises only 16 canonical DNA oligonucleotides which self-assemble to form a nested cube, inspired by the four-dimensional hypercube known as a "tesseract." Cryogenic electron microscopy (Cryo-EM) and atomic force microscopy (AFM) analysis revealed a fully formed tesseract structure with exceptional stiffness and a melting temperature of 84°C, significantly higher than other unmodified DNA nanostructures. The DNA tesseract nanostructures could be acoustically shaped into wires spanning over 500 µm, observed after deposition onto an interdigitated electrode (IDE). The wires were shown to be electrically conductive, highlighting unique prospects for application. Simplified bottom-up assembly of a small number of oligonucleotides into a relatively complex and structurally stable DNA nanostructure with characteristics ideal for modular assembly holds promise for applications across bioelectronics and other fields.

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Publication Details

Journal
Nucleic Acids Research
Published
2025-11-26
DOI
https://doi.org/10.1093/nar/gkaf1409
Primary Topic
Advanced biosensing and bioanalysis techniques
Type
article
Field-Weighted Citation Impact
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article

Acoustically seeded fabrication of a DNA tesseract into a conductive wire

Xue-Yan Wang, Julian A. Tanner, Keda Zhou, Xiaoyong Mo et al.
Nucleic Acids Research
Advanced biosensing and bioanalysis techniques
article

Acoustically seeded fabrication of a DNA tesseract into a conductive wire

Xue-Yan Wang, Julian A. Tanner, Keda Zhou, Xiaoyong Mo, Ryan H.P. Siu, Marcello DeLuca, Sichao Qu, Nicholas X. Fang, William L. Whitehouse, Simon Chi‐Chin Shiu, Andrew B. Kinghorn, Weisi He, Gaurav Arya, Edmund C M Tse, Jingyu Cui, Areebah Gul Khan, Erqian Dong, Sophie H von Torklus, Calvin Chun Long Cheung, Khuloud T Al-Jamal, Pingping Zhang, Wai Hin Chui, Jiahui Li, Tsz Fai Yu
article en

Abstract

Assembly of DNA nanostructures to sub-millimetre scales is expected to have significant potential for applications in materials science and medicine. One approach to control nanostructure growth is through using acoustic waves to create pressure nodes for clustering. Here, we report a facet-based underlying DNA nanostructure architecture with structural and stability characteristics ideal for acoustic patterning. The architecture comprises only 16 canonical DNA oligonucleotides which self-assemble to form a nested cube, inspired by the four-dimensional hypercube known as a "tesseract." Cryogenic electron microscopy (Cryo-EM) and atomic force microscopy (AFM) analysis revealed a fully formed tesseract structure with exceptional stiffness and a melting temperature of 84°C, significantly higher than other unmodified DNA nanostructures. The DNA tesseract nanostructures could be acoustically shaped into wires spanning over 500 µm, observed after deposition onto an interdigitated electrode (IDE). The wires were shown to be electrically conductive, highlighting unique prospects for application. Simplified bottom-up assembly of a small number of oligonucleotides into a relatively complex and structurally stable DNA nanostructure with characteristics ideal for modular assembly holds promise for applications across bioelectronics and other fields.

Nucleic Acids ResearchVol. 53(22)
Duke University (US), Chinese University of Hong Kong (HK), Hong Kong Science and Technology Parks Corporation (HK), University of Oxford (GB), State Key Laboratory of Synthetic Chemistry (CN), Science Oxford (GB), Institut de Recherche et d’Innovation (FR), University of Hong Kong (HK)
Openalex Percentile: Top 35%
Advanced biosensing and bioanalysis techniques
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