Temporal Annotation of German Clinical Language in Real and Synthetic Clinical Documents: Corpus Development and Baseline Tagger Validation Study

We here introduce the first TimeML-compliant annotation scheme for time expressions occurring in German clinical language and apply it to 2 clinical corpora, one with nondistributable real clinical data, the other with distributable synthetic ones. The latter constitutes the first publicly accessible, temporally annotated clinical corpus for the German language. The time tagger trained on these datasets is the first of its kind, fully compliant with the TimeML markup language. The amounts of temporal metadata in our corpora are among the largest datasets ever produced for the clinical domain, both compared with English and German predecessors.

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Publication Details

Journal
Journal of Medical Internet Research
Published
2025-12-31
DOI
https://doi.org/10.2196/71458
Primary Topic
Biomedical Text Mining and Ontologies
Type
article
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article

Temporal Annotation of German Clinical Language in Real and Synthetic Clinical Documents: Corpus Development and Baseline Tagger Validation Study

Luise Modersohn, Udo Hahn
Journal of Medical Internet Research
Biomedical Text Mining and Ontologies
article

Temporal Annotation of German Clinical Language in Real and Synthetic Clinical Documents: Corpus Development and Baseline Tagger Validation Study

Luise Modersohn, Udo Hahn
article en

Abstract

We here introduce the first TimeML-compliant annotation scheme for time expressions occurring in German clinical language and apply it to 2 clinical corpora, one with nondistributable real clinical data, the other with distributable synthetic ones. The latter constitutes the first publicly accessible, temporally annotated clinical corpus for the German language. The time tagger trained on these datasets is the first of its kind, fully compliant with the TimeML markup language. The amounts of temporal metadata in our corpora are among the largest datasets ever produced for the clinical domain, both compared with English and German predecessors.

Journal of Medical Internet ResearchVol. 28
Technical University of Munich (DE), Friedrich Schiller University Jena (DE), Leipzig University (DE)
Quality Education
Openalex Percentile: Top 35%
Biomedical Text Mining and Ontologies
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