Harnessing DNA Binding Proteins from Starved Cells for DNA Origami Protection

DNA origami is an attractive method for building structurally versatile and addressable nanostructures for diverse applications. The structural integrity of DNA, however, is rather limited in application‐relevant environments, such as in low‐magnesium, nuclease‐rich, and oxidative conditions. In nature, bacteria protect their genome against different stress factors by producing DNA‐binding proteins from starved cells (Dps). The protective function of Dps relies on its ability to bind DNA into highly ordered crystalline structures and on its role as an iron storage and oxidation center that prevents the formation of damaging radicals. Here, the hierarchical assembly of Escherichia coli Dps with DNA origami via electrostatic interactions is demonstrated. The assembly properties were studied with various DNA origami shapes under different ionic strengths. The results indicate that the formation of highly ordered structures is dependent on the origami morphology and show that the degree of order is improved by decreasing the assembly kinetics through increasing the ionic strength of the buffer. Furthermore, the co‐assembly enhances the origami stability under oxidative stress. These results show the suitability of DNA origami in guiding the ordered assembly of nanostructures. Moreover, they provide an insight into improving DNA origami stability under challenging conditions.

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Publication Details

Journal
Small Structures
Published
2025-12-31
DOI
https://doi.org/10.1002/sstr.202500626
Citations
1
Primary Topic
Advanced biosensing and bioanalysis techniques
Type
article
Field-Weighted Citation Impact
0.81

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Harnessing DNA Binding Proteins from Starved Cells for DNA Origami Protection

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Harnessing DNA Binding Proteins from Starved Cells for DNA Origami Protection

Paulina Indyka, Michał Rawski, Artur Biela, Sharon Saarinen, Alba Sanz‐Velasco, Mauri A. Kostiainen, Eduardo Anaya‐Plaza
article en
1 citations

Abstract

DNA origami is an attractive method for building structurally versatile and addressable nanostructures for diverse applications. The structural integrity of DNA, however, is rather limited in application‐relevant environments, such as in low‐magnesium, nuclease‐rich, and oxidative conditions. In nature, bacteria protect their genome against different stress factors by producing DNA‐binding proteins from starved cells (Dps). The protective function of Dps relies on its ability to bind DNA into highly ordered crystalline structures and on its role as an iron storage and oxidation center that prevents the formation of damaging radicals. Here, the hierarchical assembly of Escherichia coli Dps with DNA origami via electrostatic interactions is demonstrated. The assembly properties were studied with various DNA origami shapes under different ionic strengths. The results indicate that the formation of highly ordered structures is dependent on the origami morphology and show that the degree of order is improved by decreasing the assembly kinetics through increasing the ionic strength of the buffer. Furthermore, the co‐assembly enhances the origami stability under oxidative stress. These results show the suitability of DNA origami in guiding the ordered assembly of nanostructures. Moreover, they provide an insight into improving DNA origami stability under challenging conditions.

Small StructuresVol. 7(1)
Jagiellonian University (PL), Aalto University (FI)
Aalto-Yliopisto, Magnus Ehrnroothin Säätiö, Horizon 2020 Framework Programme, H2020 Excellent Science, HORIZON EUROPE Excellent Science
Openalex Percentile: Top 20%
Advanced biosensing and bioanalysis techniques
0.81
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