Identification of Prognostic Genes and Establishment of a Risk Score Model Related to Pancreatic Adenocarcinoma and Brown Adipose Tissue Based on Transcriptomics and Experimental Validation

<b>Background</b>: Pancreatic adenocarcinoma (PAAD), often referred to as the "king of cancers," remains poorly understood in terms of the regulatory mechanisms involving brown adipocytes (BAs). <b>Methods</b>: Bioinformatics approaches were employed to explore the role of BAs in PAAD progression, utilizing transcriptomic data from public databases. Prognostic genes were identified through differential expression analysis, univariate Cox regression, and machine learning. A risk model categorizing patients into high- and low-risk groups was developed, accompanied by a nomogram. Functional analysis, immune microenvironment profiling, somatic mutation analysis, and drug sensitivity testing were performed, with further validation via gene localization, immunohistochemistry, and clinical sample analysis. <b>Results</b>: Six prognostic genes (<i>SERPINB5</i>, <i>CALU</i>, <i>TFRC</i>, <i>LY6D</i>, <i>SFRP1</i>, and <i>GBP2</i>) were identified, with the model and nomogram exhibiting robust predictive performance. Notable differences between the high- and low-risk groups were found in immune pathways, cell infiltration, tumor mutational burden, and drug sensitivity (e.g., axitinib). <b>Conclusions</b>: <i>SERPINB5</i>, <i>SFRP1</i>, and <i>TFRC</i> were highly expressed in PAAD samples, providing new insights into potential therapeutic strategies in PAAD treatment.

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Publication Details

Journal
Genes
Published
2025-12-31
DOI
https://doi.org/10.3390/genes17010048
Primary Topic
Ferroptosis and cancer prognosis
Type
article
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article

Identification of Prognostic Genes and Establishment of a Risk Score Model Related to Pancreatic Adenocarcinoma and Brown Adipose Tissue Based on Transcriptomics and Experimental Validation

Xin Guo, Tong Bai, Yunzhi Shen, Chengyu Lv et al.
Genes
Ferroptosis and cancer prognosis
article

Identification of Prognostic Genes and Establishment of a Risk Score Model Related to Pancreatic Adenocarcinoma and Brown Adipose Tissue Based on Transcriptomics and Experimental Validation

Xin Guo, Tong Bai, Yunzhi Shen, Chengyu Lv, Bin G. Kang, Weina Wang
article en

Abstract

<b>Background</b>: Pancreatic adenocarcinoma (PAAD), often referred to as the "king of cancers," remains poorly understood in terms of the regulatory mechanisms involving brown adipocytes (BAs). <b>Methods</b>: Bioinformatics approaches were employed to explore the role of BAs in PAAD progression, utilizing transcriptomic data from public databases. Prognostic genes were identified through differential expression analysis, univariate Cox regression, and machine learning. A risk model categorizing patients into high- and low-risk groups was developed, accompanied by a nomogram. Functional analysis, immune microenvironment profiling, somatic mutation analysis, and drug sensitivity testing were performed, with further validation via gene localization, immunohistochemistry, and clinical sample analysis. <b>Results</b>: Six prognostic genes (<i>SERPINB5</i>, <i>CALU</i>, <i>TFRC</i>, <i>LY6D</i>, <i>SFRP1</i>, and <i>GBP2</i>) were identified, with the model and nomogram exhibiting robust predictive performance. Notable differences between the high- and low-risk groups were found in immune pathways, cell infiltration, tumor mutational burden, and drug sensitivity (e.g., axitinib). <b>Conclusions</b>: <i>SERPINB5</i>, <i>SFRP1</i>, and <i>TFRC</i> were highly expressed in PAAD samples, providing new insights into potential therapeutic strategies in PAAD treatment.

GenesVol. 17(1)
Tianjin Third Central Hospital (CN), Cell Technology (China) (HK), Tianjin International Joint Academy of Biomedicine (CN), Tianjin Fire Research Institute (CN), Tianjin Hospital (CN), Tianjin Medical University (CN)
Good health and well-being
Openalex Percentile: Top 27%
Ferroptosis and cancer prognosis
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