Efficient algorithms for simulating sequences along a phylogenetic tree
The source code for the different simulation algorithms, alongside the data used, is available at: https://github.com/nimrodSerokTAU/evo-sim. The simulator has also been integrated into SpartaABC, a website for the inference of indel parameters, accessible at: https://spartaabc.tau.ac.il/.
Authors
- Omer Israeli
- Elya Wygoda
- Edo Dotan
- Tal Pupko (ORCID: https://orcid.org/0000-0001-9463-2575)
- Nimrod Serok
- Asher Moshe
- Naiel Jabareen
- Itsik Pe’er
- Noa Ecker
Institutions
- Tel Aviv University (IL)
- Technion – Israel Institute of Technology (IL)
- Columbia University (US)
Publication Details
- Journal
- Bioinformatics
- Published
- 2025-12-27
- DOI
- https://doi.org/10.1093/bioinformatics/btaf686
- Citations
- 1
- Primary Topic
- Markov Chains and Monte Carlo Methods
- Type
- article
- Field-Weighted Citation Impact
- 2.63