ViMOP: a user-friendly and field-applicable pipeline for untargeted viral genome nanopore sequencing
ViMOP is freely available for non-commercial use (https://github.com/opr-group-bnitm/vimop and https://zenodo.org/records/17913089), along with the associated database (https://zenodo.org/records/17652512), the scripts used to generate it (https://zenodo.org/records/17632662) and benchmarking code (https://zenodo.org/records/17633185).
Authors
- Cyril Erameh (ORCID: https://orcid.org/0000-0001-7783-2495)
- Sarah Ryter (ORCID: https://orcid.org/0000-0003-1597-9656)
- Sophie Duraffour (ORCID: https://orcid.org/0000-0002-1239-4372)
- Stephan Günther (ORCID: https://orcid.org/0000-0002-6562-0230)
- Annick Renevey
- Giuditta Annibaldis
- Tanja Laske (ORCID: https://orcid.org/0000-0002-7922-7595)
- Liana E. Kafetzopoulou (ORCID: https://orcid.org/0000-0003-4531-1374)
- Mia Le
- Ehizojie Emua
- Philippe Lemey
- Nils Peter Petersen
- Jan Baumbach
- Jacob Camara
- Sanaba Boumbaly
Institutions
- Leibniz Institute of Virology (LIV) (DE)
- Hamburg Institute for Social Research (DE)
- Universität Hamburg (DE)
- University of Southern Denmark (DK)
- Rega Institute for Medical Research (BE)
- Global Viral (US)
- German Center for Infection Research (DE)
- Hamburg Institut (Germany) (DE)
- Irrua Specialist Teaching Hospital (NG)
- Institute of Virology of the Slovak Academy of Sciences (SK)
- Bernhard Nocht Institute for Tropical Medicine (DE)
Publication Details
- Journal
- Bioinformatics
- Published
- 2025-12-27
- DOI
- https://doi.org/10.1093/bioinformatics/btaf687
- Citations
- 1
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.81