First decoding and characterization of the mitogenomes of the crocodile newts Tylototriton anguliceps and T. ngoclinhensis (Caudata, Salamandridae) from Vietnam and a phylogenetic assessment of the genus Tylototriton

<i>Tylototriton anguliceps</i> and <i>T. ngoclinhensis</i> are two species of crocodile newts native to Vietnam. In this study, we assemble and describe for the first time the complete mitochondrial genomes of <i>T. anguliceps</i> (16,720 bp) and <i>T. ngoclinhensis</i> (16,260 bp). Both genomes consist of 37 genes, which is consistent with most other vertebrates, including 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs), and two ribosomal RNAs (rRNAs). The arrangements of these mitochondrial genes are the same in <i>T. anguliceps</i> and <i>T. ngoclinhensis</i>, but some genes have slight differences in their lengths, start codons, and stop codons. Phylogenetic analysis using 13 PCGs from the mitogenomes as well as concatenated 16S and ND2 sequences confirm the taxonomic identities of the samples, with <i>T. anguliceps</i> belonging to the subgenus Tylototriton and <i>T. ngoclinhensis</i> to the subgenus Yaotriton. Furthermore, the phylogenetic analysis reveals that the previously assembled mitogenome (GenBank accession KR733683) thought to represent <i>T. wenxianensis</i> is likely belongs to <i>T. maolanensis</i>, thus providing the first mitogenome for this species. This study's re-identification and the completion of two new mitogenomes provide a total of three new mitogenomes for future studies: those of <i>T. anguliceps</i>, <i>T. ngoclinhensis</i>, and the re-identified <i>T. maolanensis</i>. The new mitogenomes can contribute valuable data for future molecular and evolutionary studies, as well as a basis for conservation genomics of the genus <i>Tylototriton</i> and other salamanders.

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Journal
ZooKeys
Published
2025-12-30
DOI
https://doi.org/10.3897/zookeys.1265.171020
Primary Topic
Genomics and Phylogenetic Studies
Type
article
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article

First decoding and characterization of the mitogenomes of the crocodile newts Tylototriton anguliceps and T. ngoclinhensis (Caudata, Salamandridae) from Vietnam and a phylogenetic assessment of the genus Tylototriton

Linh Tu Hoang Le, Hoa Thi Ninh, Tan Viet Pham, Duy Dinh Vu et al.
ZooKeys
Genomics and Phylogenetic Studies
article

First decoding and characterization of the mitogenomes of the crocodile newts Tylototriton anguliceps and T. ngoclinhensis (Caudata, Salamandridae) from Vietnam and a phylogenetic assessment of the genus Tylototriton

Linh Tu Hoang Le, Hoa Thi Ninh, Tan Viet Pham, Duy Dinh Vu, Thomas Ziegler, Tao Thien Nguyen
article en

Abstract

<i>Tylototriton anguliceps</i> and <i>T. ngoclinhensis</i> are two species of crocodile newts native to Vietnam. In this study, we assemble and describe for the first time the complete mitochondrial genomes of <i>T. anguliceps</i> (16,720 bp) and <i>T. ngoclinhensis</i> (16,260 bp). Both genomes consist of 37 genes, which is consistent with most other vertebrates, including 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs), and two ribosomal RNAs (rRNAs). The arrangements of these mitochondrial genes are the same in <i>T. anguliceps</i> and <i>T. ngoclinhensis</i>, but some genes have slight differences in their lengths, start codons, and stop codons. Phylogenetic analysis using 13 PCGs from the mitogenomes as well as concatenated 16S and ND2 sequences confirm the taxonomic identities of the samples, with <i>T. anguliceps</i> belonging to the subgenus Tylototriton and <i>T. ngoclinhensis</i> to the subgenus Yaotriton. Furthermore, the phylogenetic analysis reveals that the previously assembled mitogenome (GenBank accession KR733683) thought to represent <i>T. wenxianensis</i> is likely belongs to <i>T. maolanensis</i>, thus providing the first mitogenome for this species. This study's re-identification and the completion of two new mitogenomes provide a total of three new mitogenomes for future studies: those of <i>T. anguliceps</i>, <i>T. ngoclinhensis</i>, and the re-identified <i>T. maolanensis</i>. The new mitogenomes can contribute valuable data for future molecular and evolutionary studies, as well as a basis for conservation genomics of the genus <i>Tylototriton</i> and other salamanders.

ZooKeysVol. 1265
University of Cologne (DE), International Center for Tropical Agriculture (VN), 108 Military Central Hospital (VN), Vietnam Academy of Science and Technology (VN), Hanoi University of Science and Technology (VN)
National Foundation for Science and Technology Development
Openalex Percentile: Top 35%
Genomics and Phylogenetic Studies
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