A Comparative Review of Spatial Transcriptomics Methods with Focus on Gastrointestinal Cancer Research

7,8].Such architectural features dictate the positional relationships among malignant, stromal, immune, and endo-thelial cells within the physicochemical microenvironment, thereby influencing clonal evolution, metabolic zonation, immune infiltration patterns, and therapeutic response.Consequently, defining these spatial properties is essential for understanding structure-function relationships within the GI tumor microenvironment (TME) and for identifying prognostic markers and therapeutically actionable vulnerabilities [9-12].Spatial transcriptomics (STs) enables quantitative geneexpression profiling while preserving native tissue architecture [13,14], allowing systematic reconstruction of cellular organization, spatially restricted cellular states, and localized interaction networks that are largely lost in dissociative ap-

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Publication Details

Journal
Journal of Digestive Cancer Research
Published
2025-12-20
DOI
https://doi.org/10.52927/jdcr.2025.13.3.269
Primary Topic
Single-cell and spatial transcriptomics
Type
article
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article

A Comparative Review of Spatial Transcriptomics Methods with Focus on Gastrointestinal Cancer Research

Seon Yeong Park, Yun Hak Kim
Journal of Digestive Cancer Research
Single-cell and spatial transcriptomics
article

A Comparative Review of Spatial Transcriptomics Methods with Focus on Gastrointestinal Cancer Research

Seon Yeong Park, Yun Hak Kim
article en

Abstract

7,8].Such architectural features dictate the positional relationships among malignant, stromal, immune, and endo-thelial cells within the physicochemical microenvironment, thereby influencing clonal evolution, metabolic zonation, immune infiltration patterns, and therapeutic response.Consequently, defining these spatial properties is essential for understanding structure-function relationships within the GI tumor microenvironment (TME) and for identifying prognostic markers and therapeutically actionable vulnerabilities [9-12].Spatial transcriptomics (STs) enables quantitative geneexpression profiling while preserving native tissue architecture [13,14], allowing systematic reconstruction of cellular organization, spatially restricted cellular states, and localized interaction networks that are largely lost in dissociative ap-

Journal of Digestive Cancer ResearchVol. 13(3)
Pusan National University Yangsan Hospital (KR), Pusan National University (KR)
Good health and well-being
Openalex Percentile: Top 36%
Single-cell and spatial transcriptomics
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A Comparative Review of Spatial Transcriptomics Methods with Focus on Gastrointestinal Cancer Research — Seon Yeong Park, Yun Hak Kim · Journal of Digestive Cancer Research (2025) | TGRS Research Map | TGRS