BASCULE: bayesian inference and clustering of mutational signatures leveraging biological priors

Mutational signatures provide key insights into cancer mutational processes, but the availability of signature catalogues generated by different groups using distinct methodologies underscores a need for standardization. We introduce a Bayesian framework that offers a systematic approach to expanding existing signature catalogues for any type of mutational signature while grouping patients based on shared signature patterns. We demonstrate that this approach can identify both known and novel molecular subtypes across nearly 8000 samples spanning six cancer types and show that stratifications derived from signature yield prognostic groups, further enhancing the translational potential of mutational signatures.

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Publication Details

Journal
Genome biology
Published
2025-12-27
DOI
https://doi.org/10.1186/s13059-025-03835-9
Primary Topic
Cancer Genomics and Diagnostics
Type
article
Field-Weighted Citation Impact
0.00
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article

BASCULE: bayesian inference and clustering of mutational signatures leveraging biological priors

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Genome biology
Cancer Genomics and Diagnostics
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BASCULE: bayesian inference and clustering of mutational signatures leveraging biological priors

Daniele Ramazzotti, Salvatore Milite, Nicola Calonaci, Edith Natalia Villegas Garcia, Alessio Ansuini, Riccardo Bergamin, Arianna Tasciotti, Azad Sadr, Elena Buscaroli, Giulio Caravagna
article en

Abstract

Mutational signatures provide key insights into cancer mutational processes, but the availability of signature catalogues generated by different groups using distinct methodologies underscores a need for standardization. We introduce a Bayesian framework that offers a systematic approach to expanding existing signature catalogues for any type of mutational signature while grouping patients based on shared signature patterns. We demonstrate that this approach can identify both known and novel molecular subtypes across nearly 8000 samples spanning six cancer types and show that stratifications derived from signature yield prognostic groups, further enhancing the translational potential of mutational signatures.

Genome biologyVol. 27(1)
University of Trieste (IT), AREA Science Park (IT), Human Technopole (IT), University of Milano-Bicocca (IT)
Openalex Percentile: Top 33%
Cancer Genomics and Diagnostics
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