An evaluation of computational methods for reconstruction of human viral DNA genomes
We provide a fully reproducible benchmark capable of evaluating currently available reconstruction programs. The benchmark is open-source and freely available at https://github.com/viromelab/HVRS. Additionally, based on the knowledge obtained from the systematic review and the benchmark, we provide some program recommendations for different reconstruction scenarios.
Authors
- Klaus Hedman (ORCID: https://orcid.org/0000-0003-1779-7960)
- Antti Sajantila
- Maria F. Perdomo (ORCID: https://orcid.org/0000-0002-9031-4251)
- Diogo Pratas (ORCID: https://orcid.org/0000-0003-1176-552X)
- Mari Toppinen (ORCID: https://orcid.org/0000-0002-1205-2399)
- Lari Pyöriä
- Maria J P Sousa
Institutions
- University of Helsinki (FI)
- Helsinki University Hospital (FI)
- Finnish Institute for Health and Welfare (FI)
- University of Aveiro (PT)
Publication Details
- Journal
- GigaScience
- Published
- 2025-12-19
- DOI
- https://doi.org/10.1093/gigascience/giaf159
- Citations
- 1
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.81
Funders
- Fundação para a Ciência e a Tecnologia