Characterization of Cell–Surface Interactions of Ligands Using <sup>19</sup> F NMR and DNP Hyperpolarization

The binding of small molecule ligands to membrane lipids and membrane proteins in live cells is characterized by their effect on nuclear spin relaxation. The hyperpolarization of <sup>19</sup>F spins provides signal enhancements for the measurement of <i>R</i><sub>2</sub> relaxation in single-scan NMR experiments. The relaxation rates of two prototype drug molecules, 2-methyl-3-(5-methylsulfanyl-[1,3,4]oxadiazol-2-yl)-6-trifluoromethyl-pyridine (ICT5040) and 4-(trifluoromethyl)benzene-1-carboximidamide (TFBC), are found to increase linearly with cell density in the presence of several different cell types. The linear increase is interpreted as the initial slope of a binding saturation curve. A stronger relaxivity of cells toward the hyperpolarized ITC5040 is observed compared to small unilamellar vesicles, when normalized to lipid concentration in each case. The difference in relaxation rates is not fully accounted for by the size difference between cells and vesicles. A larger effect of the suspension-grown DU4475 human breast cancer cells compared to adherent 4T1 mouse breast cancer cells and HEK293T human embryonic kidney cells is observed. This difference is reduced when DU4475 cells are subjected to the same trypsin treatment that is required for adherent cells, supporting the conclusion that the interaction with proteins increases the relaxivity of the cells toward the ligand molecules. The influence of these parameters suggests that model membranes are not always sufficient for binding studies, and that hyperpolarized <i>R</i><sub>2</sub> relaxometry may be used for determining the interactions of ligand molecules with cells in biophysical studies or for drug discovery.

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Journal
Analytical Chemistry
Published
2025-12-26
DOI
https://doi.org/10.1021/acs.analchem.5c04644
Primary Topic
Advanced NMR Techniques and Applications
Type
article
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article

Characterization of Cell–Surface Interactions of Ligands Using 19 F NMR and DNP Hyperpolarization

Nirmalya Pradhan, Christian Hilty, Qi Chang
Analytical Chemistry
Advanced NMR Techniques and Applications
article

Characterization of Cell–Surface Interactions of Ligands Using 19 F NMR and DNP Hyperpolarization

Nirmalya Pradhan, Christian Hilty, Qi Chang
article en

Abstract

The binding of small molecule ligands to membrane lipids and membrane proteins in live cells is characterized by their effect on nuclear spin relaxation. The hyperpolarization of <sup>19</sup>F spins provides signal enhancements for the measurement of <i>R</i><sub>2</sub> relaxation in single-scan NMR experiments. The relaxation rates of two prototype drug molecules, 2-methyl-3-(5-methylsulfanyl-[1,3,4]oxadiazol-2-yl)-6-trifluoromethyl-pyridine (ICT5040) and 4-(trifluoromethyl)benzene-1-carboximidamide (TFBC), are found to increase linearly with cell density in the presence of several different cell types. The linear increase is interpreted as the initial slope of a binding saturation curve. A stronger relaxivity of cells toward the hyperpolarized ITC5040 is observed compared to small unilamellar vesicles, when normalized to lipid concentration in each case. The difference in relaxation rates is not fully accounted for by the size difference between cells and vesicles. A larger effect of the suspension-grown DU4475 human breast cancer cells compared to adherent 4T1 mouse breast cancer cells and HEK293T human embryonic kidney cells is observed. This difference is reduced when DU4475 cells are subjected to the same trypsin treatment that is required for adherent cells, supporting the conclusion that the interaction with proteins increases the relaxivity of the cells toward the ligand molecules. The influence of these parameters suggests that model membranes are not always sufficient for binding studies, and that hyperpolarized <i>R</i><sub>2</sub> relaxometry may be used for determining the interactions of ligand molecules with cells in biophysical studies or for drug discovery.

Analytical ChemistryVol. 98(1)
Mitchell Institute (US), Division of Chemistry (US), Texas A&M University (US)
Openalex Percentile: Top 40%
Advanced NMR Techniques and Applications
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