Genomic, Evolutionary and Phenotypic Insights into Pseudomonas Phage Adele, a Novel Pakpunavirus with Potential for Phage Therapy

Bacteriophages are powerful drivers of microbial evolution and are increasingly explored as alternatives to antibiotics against multidrug-resistant pathogens such as <i>Pseudomonas aeruginosa</i>. Here, we describe the isolation, phenotypic characterization and genomic, structural and evolutionary analysis of <i>Pseudomonas</i> phage Adele, a lytic myovirus representing a novel species within the genus <i>Pakpunavirus</i> (family <i>Vandenendeviridae</i>). Phage Adele exhibits a short latent period of 20 min, a burst size of 59 ± 11 virions per infected cell and a high virulence index, efficiently lysing non-O11 <i>Pseudomonas aeruginosa</i> strains and reducing biofilm biomass. In vivo, Adele confers marked protection in a <i>Galleria mellonella</i> infection model. Phylogenetic reconstruction, synteny analysis and structural modeling demonstrate the relatedness of <i>Vandenendeviridae</i> to phages of the <i>Andersonviridae</i> and <i>Vequintavirinae</i> clades, pointing to a stable, ancestral virion architecture that has undergone lineage-specific elaborations, including the duplication and divergence of tail tube proteins. The tail assembly chaperone gene employs a conserved -1 programmed ribosomal frameshift. Phage Adele encodes an elaborate set of metabolic reprogramming and anti-defense systems, reflecting extensive horizontal gene transfer. The combination of a conserved structural architecture and mosaic genome establishes Adele as an exemplary system for studying modular evolution in phages, alongside its demonstrated therapeutic efficacy.

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Journal
Viruses
Published
2025-12-25
DOI
https://doi.org/10.3390/v18010042
Primary Topic
Bacteriophages and microbial interactions
Type
article
Field-Weighted Citation Impact
0.00

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article

Genomic, Evolutionary and Phenotypic Insights into Pseudomonas Phage Adele, a Novel Pakpunavirus with Potential for Phage Therapy

Maria Leont’eva, Б. А. Ефимов, Konstantin S. Troshin, Л. И. Кафарская et al.
Viruses
Bacteriophages and microbial interactions
article

Genomic, Evolutionary and Phenotypic Insights into Pseudomonas Phage Adele, a Novel Pakpunavirus with Potential for Phage Therapy

Maria Leont’eva, Б. А. Ефимов, Konstantin S. Troshin, Л. И. Кафарская, Peter V. Evseev, Н. Н. Сыкилинда, Konstantin Miroshnikov, Anna A. Vasilyeva, George A. Skvortsov, Artem A. Malkov, Sergei K. Komarevtsev, Mikhail A. Yaitsky, Andrei V. Chaplin, Dmitriy A. Shagin
article en

Abstract

Bacteriophages are powerful drivers of microbial evolution and are increasingly explored as alternatives to antibiotics against multidrug-resistant pathogens such as <i>Pseudomonas aeruginosa</i>. Here, we describe the isolation, phenotypic characterization and genomic, structural and evolutionary analysis of <i>Pseudomonas</i> phage Adele, a lytic myovirus representing a novel species within the genus <i>Pakpunavirus</i> (family <i>Vandenendeviridae</i>). Phage Adele exhibits a short latent period of 20 min, a burst size of 59 ± 11 virions per infected cell and a high virulence index, efficiently lysing non-O11 <i>Pseudomonas aeruginosa</i> strains and reducing biofilm biomass. In vivo, Adele confers marked protection in a <i>Galleria mellonella</i> infection model. Phylogenetic reconstruction, synteny analysis and structural modeling demonstrate the relatedness of <i>Vandenendeviridae</i> to phages of the <i>Andersonviridae</i> and <i>Vequintavirinae</i> clades, pointing to a stable, ancestral virion architecture that has undergone lineage-specific elaborations, including the duplication and divergence of tail tube proteins. The tail assembly chaperone gene employs a conserved -1 programmed ribosomal frameshift. Phage Adele encodes an elaborate set of metabolic reprogramming and anti-defense systems, reflecting extensive horizontal gene transfer. The combination of a conserved structural architecture and mosaic genome establishes Adele as an exemplary system for studying modular evolution in phages, alongside its demonstrated therapeutic efficacy.

VirusesVol. 18(1)
Pirogov Russian National Research Medical University (RU), Institute of Bioorganic Chemistry (RU)
Ministry of Science and Higher Education of the Russian Federation
Openalex Percentile: Top 30%
Bacteriophages and microbial interactions
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