Systematic Detection of Oxford Nanopore Adapter and Barcode Contamination in GenBank – Data and Code Release

This Zenodo record provides the full data and code release for “Systematic Detection of Oxford Nanopore Adapter and Barcode Contamination in GenBank”. It includes the non-redundant catalogue of 229 ONT adapter/barcode sequences, filtered BLAST hit tables, accession-level annotations, and summary presence matrices, together with scripts to reproduce all analyses and generate the consolidated Excel outputs. The source code is also available on GitHub at https://github.com/MERIDAIN-Lab/ONT_NCBI_contamination.

Authors

Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2025-12-17
DOI
https://doi.org/10.5281/zenodo.17409927
Primary Topic
Diatoms and Algae Research
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Systematic Detection of Oxford Nanopore Adapter and Barcode Contamination in GenBank – Data and Code Release

Florencia Martino
Zenodo (CERN European Organization for Nuclear Research)
Diatoms and Algae Research
article

Systematic Detection of Oxford Nanopore Adapter and Barcode Contamination in GenBank – Data and Code Release

Florencia Martino
article en

Abstract

This Zenodo record provides the full data and code release for “Systematic Detection of Oxford Nanopore Adapter and Barcode Contamination in GenBank”. It includes the non-redundant catalogue of 229 ONT adapter/barcode sequences, filtered BLAST hit tables, accession-level annotations, and summary presence matrices, together with scripts to reproduce all analyses and generate the consolidated Excel outputs. The source code is also available on GitHub at https://github.com/MERIDAIN-Lab/ONT_NCBI_contamination.

Zenodo (CERN European Organization for Nuclear Research)
Openalex Percentile: Top 43%
Diatoms and Algae Research
DOIOpen Access PDFOpenAlex
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

Systematic Detection of Oxford Nanopore Adapter and Barcode Contamination in GenBank – Data and Code Release — Florencia Martino · Zenodo (CERN European Organization for Nuclear Research) (2025) | TGRS Research Map | TGRS