Reconstructing and comparing signal transduction networks from single-cell protein quantification data
The code used for scCNR in this study has been deposited on Zenodo https://doi.org/10.5281/zenodo.17600937 and is also available as a Python module at https://github.com/ibivu/scmra. Additionally, data and code to reproduce all figures is available at https://github.com/tstohn/scmra_analysis.
Authors
- Klaas W. Mulder (ORCID: https://orcid.org/0000-0001-8516-4458)
- Evert Bosdriesz (ORCID: https://orcid.org/0000-0002-8788-9548)
- LF Wessels
- Tim Stohn (ORCID: https://orcid.org/0000-0003-4791-9199)
- Roderick van Eijl
Institutions
- Radboud University Nijmegen (NL)
- Radboud University Medical Center (NL)
- Radboud Institute for Molecular Life Sciences (NL)
- Oncode Institute (NL)
- Vrije Universiteit Amsterdam (NL)
- Delft University of Technology (NL)
Publication Details
- Journal
- Bioinformatics
- Published
- 2025-12-18
- DOI
- https://doi.org/10.1093/bioinformatics/btaf675
- Primary Topic
- Single-cell and spatial transcriptomics
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- Oncode Institute