Karstmycins A–H: Trichostatin Analogues with PTP1B Inhibitory Activities from <i>Streptomyces</i> sp. DX6D14

Eight pairs of undescribed trichostatin analogue enantiomers, (±)-karstmycins A-H (<b>1a</b>/<b>1b</b>-<b>8a</b>/<b>8b</b>), and three new enantiomers (<b>9a</b>-<b>11a</b>) together with five known analogues (<b>9b</b>-<b>11b</b>, <b>12</b>, and <b>13</b>) were isolated from karst cave-derived <i>Streptomyces</i> sp. DX6D14. The structures and absolute configurations of the new compounds were determined by extensive spectroscopic analysis, as well as nuclear magnetic resonance chemical shifts, optical rotation, and electronic circular dichroism calculations. Compounds <b>1</b> and <b>2</b> were rare trichostatins featuring a nitrile group, and compounds <b>3</b>-<b>5</b> were characterized by a unique piperidin-2-one moiety at the end of the branched C<sub>7</sub> side chain. Compounds <b>3a</b> and <b>3b</b> showed PTP1B inhibitory activity with IC<sub>50</sub> values of 27 ± 2 and 12 ± 2 μM, respectively, compared to the positive control, sodium orthovanadate (IC<sub>50</sub>: 14 ± 1 μM). A kinetic study indicated that the most potent compound <b>3b</b> was a mixed-type inhibitor for PTP1B. Molecular docking simulation revealed that <b>3b</b> simultaneously interacted with the catalytic site and the peripheral site of PTP1B.

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Journal
Journal of Natural Products
Published
2025-12-24
DOI
https://doi.org/10.1021/acs.jnatprod.5c01185
Primary Topic
Microbial Natural Products and Biosynthesis
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article
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article

Karstmycins A–H: Trichostatin Analogues with PTP1B Inhibitory Activities from Streptomyces sp. DX6D14

Du‐Qiang Luo, Z. Wang, Jiao-Cen Guo, Qing‐Yun Ma et al.
Journal of Natural Products
Microbial Natural Products and Biosynthesis
article

Karstmycins A–H: Trichostatin Analogues with PTP1B Inhibitory Activities from Streptomyces sp. DX6D14

Du‐Qiang Luo, Z. Wang, Jiao-Cen Guo, Qing‐Yun Ma, Fang Bao Zhu, Qingyi Xie, Hao-Fu Dai, Jing-Zhe Yuan, You-Xing Zhao, Wen-Jun Li, Li Yang, Qing Liu
article en

Abstract

Eight pairs of undescribed trichostatin analogue enantiomers, (±)-karstmycins A-H (<b>1a</b>/<b>1b</b>-<b>8a</b>/<b>8b</b>), and three new enantiomers (<b>9a</b>-<b>11a</b>) together with five known analogues (<b>9b</b>-<b>11b</b>, <b>12</b>, and <b>13</b>) were isolated from karst cave-derived <i>Streptomyces</i> sp. DX6D14. The structures and absolute configurations of the new compounds were determined by extensive spectroscopic analysis, as well as nuclear magnetic resonance chemical shifts, optical rotation, and electronic circular dichroism calculations. Compounds <b>1</b> and <b>2</b> were rare trichostatins featuring a nitrile group, and compounds <b>3</b>-<b>5</b> were characterized by a unique piperidin-2-one moiety at the end of the branched C<sub>7</sub> side chain. Compounds <b>3a</b> and <b>3b</b> showed PTP1B inhibitory activity with IC<sub>50</sub> values of 27 ± 2 and 12 ± 2 μM, respectively, compared to the positive control, sodium orthovanadate (IC<sub>50</sub>: 14 ± 1 μM). A kinetic study indicated that the most potent compound <b>3b</b> was a mixed-type inhibitor for PTP1B. Molecular docking simulation revealed that <b>3b</b> simultaneously interacted with the catalytic site and the peripheral site of PTP1B.

Journal of Natural ProductsVol. 89(1)
Chinese Academy of Tropical Agricultural Sciences (CN), Biocon (Switzerland) (CH), Chinese Academy of Sciences (CN), Institute of Ecology and Geography (MD), Key Laboratory of Guangdong Province (CN), Tropical Bioscience and Biotechnology Research Institute (CN), Hebei University (CN)
Openalex Percentile: Top 30%
Microbial Natural Products and Biosynthesis
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Karstmycins A–H: Trichostatin Analogues with PTP1B Inhibitory Activities from <i>Streptomyces</i> sp. DX6D14 — Du‐Qiang Luo, Z. Wang, et al. · Journal of Natural Products (2025) | TGRS Research Map | TGRS