Does Fermentation Enhance Beverage Safety? Kombucha’s Resistance to Microbial Invasion Suggests a Protective Role

Does fermentation enhance the safety of beverages? This study investigates kombucha's resilience to microbial invasion from human hands. Kombucha, an ancient fermented tea, relies on a biofilm known as a symbiotic community of bacteria and yeast (SCOBY) and a starter culture to ferment sweet tea, producing various metabolites including gluconic acid, acetic acid, ethanol, and carbon dioxide. While fermented foods have been historically associated with potential health benefits, direct evidence comparing the prevalence of human pathogens in fermented versus non-fermented beverages has been lacking. To address this, we conducted a citizen science experiment at Arizona State University, introducing swabs from people's palms into both kombucha and a sweet tea control. Over 30 days, we monitored the bacterial and fungal composition using 16S and ITS rRNA sequencing. Our findings reveal that kombucha maintained a relatively stable microbial profile and physical appearance, with a typical SCOBY biofilm developing. In stark contrast, the sweet tea experienced a dramatic change in microbial composition and was visibly compromised by rapidly growing microorganisms. Importantly, this suggests that the complex microbial ecosystem of kombucha can limit the growth of foreign microbes introduced from human hands. Given that human pathogens were absent from the kombucha while present in the tea samples, our results indicate that the antimicrobial properties of fermentation byproducts and the physical barrier of the SCOBY may contribute to this resilience. Further research is warranted to fully elucidate the mechanisms underlying kombucha's resistance to microbial invasion.

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Publication Details

Journal
bioRxiv (Cold Spring Harbor Laboratory)
Published
2025-12-24
DOI
https://doi.org/10.64898/2025.12.23.696228
Primary Topic
Tea Polyphenols and Effects
Type
article
Field-Weighted Citation Impact
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article

Does Fermentation Enhance Beverage Safety? Kombucha’s Resistance to Microbial Invasion Suggests a Protective Role

Joe Alcock, Robert R. Dunn, Alexander May, Gissel Marquez Alcaraz et al.
bioRxiv (Cold Spring Harbor Laboratory)
Tea Polyphenols and Effects
article

Does Fermentation Enhance Beverage Safety? Kombucha’s Resistance to Microbial Invasion Suggests a Protective Role

Joe Alcock, Robert R. Dunn, Alexander May, Gissel Marquez Alcaraz, Shrinath Narayanan, Carlo C. Maley, Jessica Siegal, Angelo Fortunato, Hanna L. Berman, Bryan Yavari, Cristina Baciu, Jessica D. Ayers, Athena Aktipis
article en

Abstract

Does fermentation enhance the safety of beverages? This study investigates kombucha's resilience to microbial invasion from human hands. Kombucha, an ancient fermented tea, relies on a biofilm known as a symbiotic community of bacteria and yeast (SCOBY) and a starter culture to ferment sweet tea, producing various metabolites including gluconic acid, acetic acid, ethanol, and carbon dioxide. While fermented foods have been historically associated with potential health benefits, direct evidence comparing the prevalence of human pathogens in fermented versus non-fermented beverages has been lacking. To address this, we conducted a citizen science experiment at Arizona State University, introducing swabs from people's palms into both kombucha and a sweet tea control. Over 30 days, we monitored the bacterial and fungal composition using 16S and ITS rRNA sequencing. Our findings reveal that kombucha maintained a relatively stable microbial profile and physical appearance, with a typical SCOBY biofilm developing. In stark contrast, the sweet tea experienced a dramatic change in microbial composition and was visibly compromised by rapidly growing microorganisms. Importantly, this suggests that the complex microbial ecosystem of kombucha can limit the growth of foreign microbes introduced from human hands. Given that human pathogens were absent from the kombucha while present in the tea samples, our results indicate that the antimicrobial properties of fermentation byproducts and the physical barrier of the SCOBY may contribute to this resilience. Further research is warranted to fully elucidate the mechanisms underlying kombucha's resistance to microbial invasion.

bioRxiv (Cold Spring Harbor Laboratory)
Boise State University (US), North Carolina State University (US), University of New Mexico (US), Arizona State University (US), University of Lausanne (CH)
Zero hunger
Openalex Percentile: Top 30%
Tea Polyphenols and Effects
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