Expert-Annotated Optical Microscopy Images of Human Sperm for Detection and DNA Fragmentation Assessment

We present a collection of expert-labeled image datasets designed to support automated analysis of human sperm in the context of male fertility diagnostics. The collection includes three datasets: a raw set of over 400 high-resolution, stained bright-field images containing multiple sperm cells; a binary classification set with cropped image patches labeled as either sperm or non-sperm; and a multiclass dataset of individual sperm cells categorized by DNA fragmentation level, based on halo size (large, medium, small, or no halo). All annotations were independently performed by five experienced embryologists, with final labels determined by majority agreement. Together, these datasets provide a foundation for training and benchmarking machine learning models for sperm detection, classification, and chromatin integrity assessment. The data are openly available to facilitate reproducibility and support further research in reproductive health.

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Publication Details

Journal
Scientific Data
Published
2025-12-24
DOI
https://doi.org/10.1038/s41597-025-06486-4
Primary Topic
Sperm and Testicular Function
Type
article
Field-Weighted Citation Impact
0.00

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article

Expert-Annotated Optical Microscopy Images of Human Sperm for Detection and DNA Fragmentation Assessment

Hossein Torkashvand, Hanan Saadat, Mahdi-Reza Borna
Scientific Data
Sperm and Testicular Function
article

Expert-Annotated Optical Microscopy Images of Human Sperm for Detection and DNA Fragmentation Assessment

Hossein Torkashvand, Hanan Saadat, Mahdi-Reza Borna
article en

Abstract

We present a collection of expert-labeled image datasets designed to support automated analysis of human sperm in the context of male fertility diagnostics. The collection includes three datasets: a raw set of over 400 high-resolution, stained bright-field images containing multiple sperm cells; a binary classification set with cropped image patches labeled as either sperm or non-sperm; and a multiclass dataset of individual sperm cells categorized by DNA fragmentation level, based on halo size (large, medium, small, or no halo). All annotations were independently performed by five experienced embryologists, with final labels determined by majority agreement. Together, these datasets provide a foundation for training and benchmarking machine learning models for sperm detection, classification, and chromatin integrity assessment. The data are openly available to facilitate reproducibility and support further research in reproductive health.

Scientific DataVol. 13(1)
Hamedan University of Medical Sciences (IR), Tarbiat Modares University (IR), Iran University of Medical Sciences (IR)
Hamadan University of Medical Sciences
Openalex Percentile: Top 28%
Sperm and Testicular Function
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