Electron Density Transport During Chemical Reactions
Statistical approaches are an increasingly powerful technique for characterizing changes in the electronic structure during reactions or molecular excitations. High-throughput studies in complex environments, in particular, benefit from methods that are both computationally efficient and require minimal pre- or postprocessing of electronic structure outputs. To address this need, we investigate optimal transport (OT), which compares probability distributions through a cost-minimizing transport plan. By applying OT to electron densities along a reaction coordinate and partitioning the resulting transport plan, we reveal how noncore electron density evolves during chemical processes. We demonstrate the approach on two systems: Bergman cyclization and proton transfer occurring within a water cluster. Along the intrinsic reaction coordinate of Bergman cyclization, OT yields chemically intuitive insights and complements information provided by the electron localization function. For the proton-transfer reaction, based on ab initio molecular dynamics, OT clearly identifies individual transfer events. Together, these studies demonstrate that optimal transport provides a promising new framework for investigating chemical reactivity.
Authors
- Yihui Wei (ORCID: https://orcid.org/0000-0002-7977-6893)
- Bala Krishnamoorthy (ORCID: https://orcid.org/0000-0001-5771-4387)
- Aurora E. Clark (ORCID: https://orcid.org/0000-0001-9381-721X)
- Enrique Alvarado (ORCID: https://orcid.org/0000-0002-8616-2953)
- Jackson Elowitt (ORCID: https://orcid.org/0009-0001-5782-7178)
- Nathan May
Institutions
- Iowa State University (US)
- University of Utah (US)
- Toronto Metropolitan University (CA)
- Washington State University (US)
Publication Details
- Journal
- Journal of Chemical Theory and Computation
- Published
- 2025-12-23
- DOI
- https://doi.org/10.1021/acs.jctc.5c01509
- Primary Topic
- Advanced Chemical Physics Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.00