One pocket to activate them all (?): Efforts on understanding the modulator pocket in K2P channels

The modulator pocket is a cryptic site discovered in the TREK1 (K<sub>2P</sub>2.1) K2P channel. This pocket, located close to the selectivity filter, accommodates agonists that enhance the channel's activity. Since its discovery, equivalent sites in other K2P channels have been shown to bind various ligands, both endogenous and exogenous. In this review, we attempt to elucidate how the modulator pocket contributes to K2P channel activation. To this end, we first describe the gating mechanisms reported in the literature and rationalize their modes of action. We then highlight previous experimental and computational evidence for agonists that bind to the modulator pocket, together with mutations at this site that affect gating. Finally, we elaborate how the activation signal arising from the modulator pocket is transduced to the gates in K2P channels. In doing so, we outline a potential common modulator pocket architecture across K2P channels: a largely amphipathic structure - consistent with the expected properties of a pocket exposed at the interface between a hydrophobic membrane and the aqueous solvent - but still with some important channel-sequence-variations. This architecture and its key differences can be leveraged for the design of new selective and potent modulators.

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Publication Details

Journal
Channels
Published
2025-12-23
DOI
https://doi.org/10.1080/19336950.2025.2602975
Primary Topic
Ion channel regulation and function
Type
article
Field-Weighted Citation Impact
0.00
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article

One pocket to activate them all (?): Efforts on understanding the modulator pocket in K2P channels

Wojciech Kopeć, Marcus Schewe, Edward Mendez-Otalvaro, Bert L. de Groot
Channels
Ion channel regulation and function
article

One pocket to activate them all (?): Efforts on understanding the modulator pocket in K2P channels

Wojciech Kopeć, Marcus Schewe, Edward Mendez-Otalvaro, Bert L. de Groot
article en

Abstract

The modulator pocket is a cryptic site discovered in the TREK1 (K<sub>2P</sub>2.1) K2P channel. This pocket, located close to the selectivity filter, accommodates agonists that enhance the channel's activity. Since its discovery, equivalent sites in other K2P channels have been shown to bind various ligands, both endogenous and exogenous. In this review, we attempt to elucidate how the modulator pocket contributes to K2P channel activation. To this end, we first describe the gating mechanisms reported in the literature and rationalize their modes of action. We then highlight previous experimental and computational evidence for agonists that bind to the modulator pocket, together with mutations at this site that affect gating. Finally, we elaborate how the activation signal arising from the modulator pocket is transduced to the gates in K2P channels. In doing so, we outline a potential common modulator pocket architecture across K2P channels: a largely amphipathic structure - consistent with the expected properties of a pocket exposed at the interface between a hydrophobic membrane and the aqueous solvent - but still with some important channel-sequence-variations. This architecture and its key differences can be leveraged for the design of new selective and potent modulators.

ChannelsVol. 20(1)
Queen Mary University of London (GB), Christian-Albrechts-Universität zu Kiel (DE), Max Planck Institute for Multidisciplinary Sciences (DE)
Openalex Percentile: Top 36%
Ion channel regulation and function
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