Statistical inference on high-dimensional covariate-dependent Gaussian graphical regressions

In many genomic studies, gene co-expression graphs are influenced by subject-level covariates like single nucleotide polymorphisms. Traditional Gaussian graphical models ignore these covariates and estimate only population-level networks, potentially masking important heterogeneity. Covariate-dependent Gaussian graphical regressions address this limitation by regressing the precision matrix on covariates, thereby modeling how graph structures vary with high-dimensional subject-specific covariates. To fit the model, we adopt a multi-task learning approach that achieves lower error rates than node-wise regressions. Yet, the important problem of statistical inference in this setting remains largely unexplored. We propose a class of debiased estimators based on multi-task learners, which can be computed quickly and separately. In a key step, we introduce a novel projection technique for estimating the inverse covariance matrix, reducing optimization costs to scale with the sample size n. Our debiased estimators achieve fast convergence and asymptotic normality, enabling valid inference. Simulations demonstrate the utility of the method, and an application to a brain cancer gene-expression dataset reveals meaningful biological relationships.

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Publication Details

Journal
Biometrics
Published
2025-10-08
DOI
https://doi.org/10.1093/biomtc/ujaf165
Primary Topic
Bayesian Modeling and Causal Inference
Type
article
Field-Weighted Citation Impact
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article

Statistical inference on high-dimensional covariate-dependent Gaussian graphical regressions

Xuran Meng, Yi Li, Jingfei Zhang
Biometrics
Bayesian Modeling and Causal Inference
article

Statistical inference on high-dimensional covariate-dependent Gaussian graphical regressions

Xuran Meng, Yi Li, Jingfei Zhang
article en

Abstract

In many genomic studies, gene co-expression graphs are influenced by subject-level covariates like single nucleotide polymorphisms. Traditional Gaussian graphical models ignore these covariates and estimate only population-level networks, potentially masking important heterogeneity. Covariate-dependent Gaussian graphical regressions address this limitation by regressing the precision matrix on covariates, thereby modeling how graph structures vary with high-dimensional subject-specific covariates. To fit the model, we adopt a multi-task learning approach that achieves lower error rates than node-wise regressions. Yet, the important problem of statistical inference in this setting remains largely unexplored. We propose a class of debiased estimators based on multi-task learners, which can be computed quickly and separately. In a key step, we introduce a novel projection technique for estimating the inverse covariance matrix, reducing optimization costs to scale with the sample size n. Our debiased estimators achieve fast convergence and asymptotic normality, enabling valid inference. Simulations demonstrate the utility of the method, and an application to a brain cancer gene-expression dataset reveals meaningful biological relationships.

BiometricsVol. 81(4)
Emory University (US), University of Michigan (US)
Openalex Percentile: Top 19%
Bayesian Modeling and Causal Inference
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