Research on drug-drug interaction prediction using capsule neural network based on self-attention mechanism

Experimental results on two benchmark datasets show that the ACaps-DDI model outperforms six other classification models across seven evaluation metrics, demonstrating its strong predictive performance and generalization ability. Ablation studies further confirm the effectiveness of individual components within the ACaps-DDI architecture. Finally, case studies involving three drugs (cannabidiol, torasemide, and cyclophosphamide) validate the model's ability to predict previously unknown drug interactions. In conclusion, the ACaps-DDI model exhibits high predictive accuracy for known drugs and demonstrates promising predictive capability for unseen drugs, highlighting its practical significance for clinical research on drug interactions.

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Publication Details

Journal
BMC Bioinformatics
Published
2025-12-23
DOI
https://doi.org/10.1186/s12859-025-06308-9
Primary Topic
Computational Drug Discovery Methods
Type
article
Field-Weighted Citation Impact
0.00

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article

Research on drug-drug interaction prediction using capsule neural network based on self-attention mechanism

Bin Nie, Xingxin Chen, Zhuo Wang, Zhen Miao
BMC Bioinformatics
Computational Drug Discovery Methods
article

Research on drug-drug interaction prediction using capsule neural network based on self-attention mechanism

Bin Nie, Xingxin Chen, Zhuo Wang, Zhen Miao
article en

Abstract

Experimental results on two benchmark datasets show that the ACaps-DDI model outperforms six other classification models across seven evaluation metrics, demonstrating its strong predictive performance and generalization ability. Ablation studies further confirm the effectiveness of individual components within the ACaps-DDI architecture. Finally, case studies involving three drugs (cannabidiol, torasemide, and cyclophosphamide) validate the model's ability to predict previously unknown drug interactions. In conclusion, the ACaps-DDI model exhibits high predictive accuracy for known drugs and demonstrates promising predictive capability for unseen drugs, highlighting its practical significance for clinical research on drug interactions.

BMC BioinformaticsVol. 26(1)
Jiangxi University of Traditional Chinese Medicine (CN), Universiti Teknologi MARA (MY)
National Natural Science Foundation of China
Good health and well-being
Openalex Percentile: Top 28%
Computational Drug Discovery Methods
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Research on drug-drug interaction prediction using capsule neural network based on self-attention mechanism — Bin Nie, Xingxin Chen, et al. · BMC Bioinformatics (2025) | TGRS Research Map | TGRS