A trio-binned, haplotype-resolved genome sequence of the zebrafish, Danio rerio Hamilton 1822, SAT strain
We present the trio-binned, haplotype-resolved genome assemblies (released in 2020) of both haplotypes of an individual of the <i>Danio rerio</i> SAT strain, a cross between Tuebingen (maternal) and AB (paternal) strains (zebrafish; Chordata; Actinopteri; Cypriniformes; Cyprinidae). The genome sequence of the paternal haplotype (fDreABH1) is 1,354.1 megabases long, while the genome sequence of the maternal haplotype (fDreTuH) is 1,360.5 megabases long. Most of the assembly is scaffolded into 25 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 16.6 kilobases in length.
Authors
- Busch-Nentwich Elisabeth M
- Karen Oliver (ORCID: https://orcid.org/0000-0001-5188-6153)
- Shane McCarthy (ORCID: https://orcid.org/0000-0002-2715-4187)
- Sergey Koren (ORCID: https://orcid.org/0000-0002-1472-8962)
- Arang Rhie (ORCID: https://orcid.org/0000-0002-9809-8127)
- Gene Myers
- Michelle Smith
- Jonathan M. D. Wood
- Kerstin Howe
Institutions
- Queen Mary University of London (GB)
- University of Cambridge (GB)
- Wellcome Sanger Institute (GB)
- National Human Genome Research Institute (US)
- Bridge University (SS)
- Amgen (United Kingdom) (GB)
- Max Planck Institute of Molecular Cell Biology and Genetics (DE)
Publication Details
- Journal
- Wellcome Open Research
- Published
- 2025-12-22
- DOI
- https://doi.org/10.12688/wellcomeopenres.25185.1
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.00