Expanding the Structural Diversity of Sesquarterpenes through Genome Mining of Noncanonical Class IB Terpene Synthases

Only a few sesquarterpenes (C<sub>35</sub> terpenes) have been found in nature, highlighting a chemical space requiring focused exploration of compounds. Noncanonical class IB terpene synthases (IB-TPSs) are the only enzymes that can cyclize C<sub>35</sub> prenyldiphosphate. Currently, ca. 6000 IB-TPS homologues from bacteria have been registered in the NCBI database. However, only two sesquarterpenes have been identified as IB-TPS products. In this study, we performed genome mining of 11 IB-TPSs from phylogenetically diverse bacterial species using an expression system in <i>Bacillus subtilis</i>. We revealed that 8 of the 11 homologues with ≥30% identity to <i>Bacillus subtilis</i> TPS (BsuTPS) synthesize the same product, tetraprenyl-β-curcumene, as BsuTPS. The absolute stereochemistry of the tetraprenyl-β-curcumene formed by BsuTPS and one of its homologues was determined to be (-)-7<i>R</i> using vibrational circular dichroism and specific optical rotation analyses. In contrast, 3 of the 11 IB-TPS homologues with <30% identity to BsuTPS produced 3 novel cyclic sesquarterpenes, 1 of which had an unprecedented 5/3-fused bicyclic sesquarterpene skeleton. These new sesquarterpenes could be synthesized through various carbocation quench mechanisms that differ from those of previously identified sesquarterpenes. In this study, we demonstrated that novel sesquarterpenes can be discovered with a high probability (3 out of 4) among IB-TPS homologues with <30% identity to BsuTPS, thereby expanding the structural diversity of sesquarterpenes.

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Journal
ACS Chemical Biology
Published
2025-12-22
DOI
https://doi.org/10.1021/acschembio.5c00678
Primary Topic
Plant biochemistry and biosynthesis
Type
article
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article

Expanding the Structural Diversity of Sesquarterpenes through Genome Mining of Noncanonical Class IB Terpene Synthases

Tohru Taniguchi, Yurie Fujii, Yu Shinohara, Shogo Iwakata et al.
ACS Chemical Biology
Plant biochemistry and biosynthesis
article

Expanding the Structural Diversity of Sesquarterpenes through Genome Mining of Noncanonical Class IB Terpene Synthases

Tohru Taniguchi, Yurie Fujii, Yu Shinohara, Shogo Iwakata, M. Fujihashi, Tsutomu Sato, Yuka Takaba, Tetsuro Shinada, Ikiru Otsuka, Daijiro Ueda, Saya Sugisawa, Yumika Suzuki, Shuya Azuma
article en

Abstract

Only a few sesquarterpenes (C<sub>35</sub> terpenes) have been found in nature, highlighting a chemical space requiring focused exploration of compounds. Noncanonical class IB terpene synthases (IB-TPSs) are the only enzymes that can cyclize C<sub>35</sub> prenyldiphosphate. Currently, ca. 6000 IB-TPS homologues from bacteria have been registered in the NCBI database. However, only two sesquarterpenes have been identified as IB-TPS products. In this study, we performed genome mining of 11 IB-TPSs from phylogenetically diverse bacterial species using an expression system in <i>Bacillus subtilis</i>. We revealed that 8 of the 11 homologues with ≥30% identity to <i>Bacillus subtilis</i> TPS (BsuTPS) synthesize the same product, tetraprenyl-β-curcumene, as BsuTPS. The absolute stereochemistry of the tetraprenyl-β-curcumene formed by BsuTPS and one of its homologues was determined to be (-)-7<i>R</i> using vibrational circular dichroism and specific optical rotation analyses. In contrast, 3 of the 11 IB-TPS homologues with <30% identity to BsuTPS produced 3 novel cyclic sesquarterpenes, 1 of which had an unprecedented 5/3-fused bicyclic sesquarterpene skeleton. These new sesquarterpenes could be synthesized through various carbocation quench mechanisms that differ from those of previously identified sesquarterpenes. In this study, we demonstrated that novel sesquarterpenes can be discovered with a high probability (3 out of 4) among IB-TPS homologues with <30% identity to BsuTPS, thereby expanding the structural diversity of sesquarterpenes.

ACS Chemical BiologyVol. 21(1)
Hokkaido University (JP), Kyoto University (JP), Osaka Metropolitan University (JP), Niigata University (JP)
Openalex Percentile: Top 37%
Plant biochemistry and biosynthesis
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