Direct Evidence That 8-Dehydrogenation Channels the Biosynthetic Pathway of Rifamycins

The 8-OH of rifamycin is essential for its bioactivity, while its naphthalene ring formation with 8-OH has remained unclear. Biochemical and structural analysis has demonstrated that a pair of rare NAD<sup>+</sup>-dependent dehydrogenases, RifS and RifT, forms a S<sub>2</sub>T<sub>2</sub> structure to dehydrogenate at C8 in a structure-dependent manner. RifS catalyzes 8-dehydrogenation through a canonical NAD<sup>+</sup>-dependent mechanism, while RifT acts as a noncatalytic partner. Finally, we proposed a plausible pathway for the transformation of benzene-type prorifamycin A (<b>1</b>) to naphthalene-type 34a-deoxyrifamycin W (<b>1a</b>) bearing the 8-OH group. These results provided direct evidence for the branch point of rifamycin and 8-deoxyrifamycin biosynthesis and paved an approach to engineering novel ansamycins.

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Journal
ACS Chemical Biology
Published
2025-12-22
DOI
https://doi.org/10.1021/acschembio.5c00556
Primary Topic
Enzyme Structure and Function
Type
article
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article

Direct Evidence That 8-Dehydrogenation Channels the Biosynthetic Pathway of Rifamycins

Yuemao Shen, Feng Ye, Meng Niu, Haoxin Wang et al.
ACS Chemical Biology
Enzyme Structure and Function
article

Direct Evidence That 8-Dehydrogenation Channels the Biosynthetic Pathway of Rifamycins

Yuemao Shen, Feng Ye, Meng Niu, Haoxin Wang, Wei Zhang, Yaoyao Li, Deyu Zhu
article en

Abstract

The 8-OH of rifamycin is essential for its bioactivity, while its naphthalene ring formation with 8-OH has remained unclear. Biochemical and structural analysis has demonstrated that a pair of rare NAD<sup>+</sup>-dependent dehydrogenases, RifS and RifT, forms a S<sub>2</sub>T<sub>2</sub> structure to dehydrogenate at C8 in a structure-dependent manner. RifS catalyzes 8-dehydrogenation through a canonical NAD<sup>+</sup>-dependent mechanism, while RifT acts as a noncatalytic partner. Finally, we proposed a plausible pathway for the transformation of benzene-type prorifamycin A (<b>1</b>) to naphthalene-type 34a-deoxyrifamycin W (<b>1a</b>) bearing the 8-OH group. These results provided direct evidence for the branch point of rifamycin and 8-deoxyrifamycin biosynthesis and paved an approach to engineering novel ansamycins.

ACS Chemical BiologyVol. 21(1)
Shandong University (CN), State Key Laboratory of Microbial Technology
Clean water and sanitation
Openalex Percentile: Top 49%
Enzyme Structure and Function
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Direct Evidence That 8-Dehydrogenation Channels the Biosynthetic Pathway of Rifamycins — Yuemao Shen, Feng Ye, et al. · ACS Chemical Biology (2025) | TGRS Research Map | TGRS