<i>Streptomyces shinuiensis</i> sp. nov., a Salternamides-Producing Bacterium Isolated from Saltern Sediment

Strain HK10<sup>T</sup>, previously isolated from saltern sediment and identified as a salternamides-producing bacterium, was taxonomically characterized in the present study. The strain is a Gram-stain-positive, aerobic, and filamentous actinobacterium. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain HK10<sup>T</sup> belongs to the genus <i>Streptomyces</i> and is most closely related to <i>Streptomyces radiopugnans</i> R97<sup>T</sup> (99.4% sequence similarity), followed by other <i>Streptomyces</i> species with sequence similarities of ≤98.9%. The draft genome sequence of strain HK10<sup>T</sup> was 6.69 Mbp and a DNA G+C content of 72.7%. Average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values between strain HK10<sup>T</sup> and type strains of the genus <i>Streptomyces</i> were ≤92.7% and ≤53.0%, respectively, which are below the thresholds for species delineation, indicating that strain HK10<sup>T</sup> represents a novel species. The major cellular fatty acids were iso-C<sub>16:0</sub>, anteiso-C<sub>15:0</sub>, anteiso-C<sub>17:0</sub>, and iso-C<sub>14:0</sub>. The predominant menaquinone was menaquinone-9 (MK-9). The polar lipid profile included phosphatidylethanolamine, phosphatidylglycerol, and phosphatidylinositol dimannoside. Whole-cell hydrolysates of strain HK10<sup>T</sup> contained <sub><i>L,L</i></sub>-diaminopimelic acid and glycine. Based on phylogenetic, genomic, chemotaxonomic, and physiological evidence, strain HK10<sup>T</sup> is considered to represent a novel species of the genus <i>Streptomyces</i>, for which the name <i>Streptomyces shinuiensis</i> sp. nov. is proposed. The type of strain is HK10<sup>T</sup> (= NBRC 114904<sup>T</sup> = KACC 22137<sup>T</sup>).

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Journal
Journal of Microbiology and Biotechnology
Published
2025-12-18
DOI
https://doi.org/10.4014/jmb.2510.10026
Primary Topic
Genomics and Phylogenetic Studies
Type
article
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article

Streptomyces shinuiensis sp. nov., a Salternamides-Producing Bacterium Isolated from Saltern Sediment

Yeonjung Lim, OH Dong‐Chan, Jayho Lee, Jang‐Cheon Cho et al.
Journal of Microbiology and Biotechnology
Genomics and Phylogenetic Studies
article

Streptomyces shinuiensis sp. nov., a Salternamides-Producing Bacterium Isolated from Saltern Sediment

Yeonjung Lim, OH Dong‐Chan, Jayho Lee, Jang‐Cheon Cho, Mirae Kim, Ye-Eun Moon
article en

Abstract

Strain HK10<sup>T</sup>, previously isolated from saltern sediment and identified as a salternamides-producing bacterium, was taxonomically characterized in the present study. The strain is a Gram-stain-positive, aerobic, and filamentous actinobacterium. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain HK10<sup>T</sup> belongs to the genus <i>Streptomyces</i> and is most closely related to <i>Streptomyces radiopugnans</i> R97<sup>T</sup> (99.4% sequence similarity), followed by other <i>Streptomyces</i> species with sequence similarities of ≤98.9%. The draft genome sequence of strain HK10<sup>T</sup> was 6.69 Mbp and a DNA G+C content of 72.7%. Average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values between strain HK10<sup>T</sup> and type strains of the genus <i>Streptomyces</i> were ≤92.7% and ≤53.0%, respectively, which are below the thresholds for species delineation, indicating that strain HK10<sup>T</sup> represents a novel species. The major cellular fatty acids were iso-C<sub>16:0</sub>, anteiso-C<sub>15:0</sub>, anteiso-C<sub>17:0</sub>, and iso-C<sub>14:0</sub>. The predominant menaquinone was menaquinone-9 (MK-9). The polar lipid profile included phosphatidylethanolamine, phosphatidylglycerol, and phosphatidylinositol dimannoside. Whole-cell hydrolysates of strain HK10<sup>T</sup> contained <sub><i>L,L</i></sub>-diaminopimelic acid and glycine. Based on phylogenetic, genomic, chemotaxonomic, and physiological evidence, strain HK10<sup>T</sup> is considered to represent a novel species of the genus <i>Streptomyces</i>, for which the name <i>Streptomyces shinuiensis</i> sp. nov. is proposed. The type of strain is HK10<sup>T</sup> (= NBRC 114904<sup>T</sup> = KACC 22137<sup>T</sup>).

Journal of Microbiology and BiotechnologyVol. 35
Seoul National University (KR), Inha University (KR)
National Research Foundation, Hebrew University of Jerusalem, Ministry of Oceans and Fisheries, Korea Institute of Marine Science and Technology promotion
Openalex Percentile: Top 37%
Genomics and Phylogenetic Studies
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