Finding the True Responders: Stratifying dMMR/MSI-H Tumors for ICI Response
<b>Background/Objectives</b>: Immune checkpoint inhibitors (ICIs) show durable efficacy in tumors with deficient mismatch repair (dMMR) or high microsatellite instability (MSI-H), yet clinical responses remain heterogeneous. This study aimed to define immune subgroups within dMMR/MSI-H tumors and develop a reproducible transcriptomic signature predictive of ICI response. <b>Methods</b>: Four MSI-H-enriched cancer types (UCEC, COAD, READ, STAD) from The Cancer Genome Atlas were analyzed. Tumors were stratified by immune cell infiltration (MCP-counter immune composite score) and T-cell-inflamed gene expression profiles (GEP score). Integrating these two axes defined four immune subgroups. Differential expression, random forest feature selection, and pathway enrichment were performed to identify immune programs. A 20-gene immune signature representing the most immune-active subgroup was developed and validated across TCGA, GEO (GSE39582), and IMvigor210 cohorts. <b>Results</b>: Among the four subgroups, the most immune-active group showed strong activation of interferon signaling, antigen presentation, and T-cell-mediated pathways. The 20-gene signature-including CD74, STAT1, TAP1, and HLA-class genes-achieved high reproducibility (mean AUC = 0.95 ± 0.02; accuracy ≈ 89%). In the IMvigor210 cohort, this signature identified tumors with higher PD-L1 blockade response (55.6% vs. 32.8%, <i>p</i> = 0.034) and improved survival trends in the TMB-high subset. <b>Conclusions</b>: The proposed 20-gene signature quantitatively captures immune heterogeneity in dMMR/MSI-H tumors and serves as a practical, interpretable biomarker to identify true ICI responders and guide precision immunotherapy.
Authors
- Jun Hee Pyo
- Mihyun Kim (ORCID: https://orcid.org/0000-0002-8347-103X)
- Seongwon Na (ORCID: https://orcid.org/0009-0004-9742-5351)
- K. Kim
- Jisung Jang
- Nari Kim
Institutions
- Asan Medical Center (KR)
- University of Ulsan (KR)
- Korea Pharma (South Korea) (KR)
- Korea Pharmaceutical and Bio-Pharma Manufacturers Association (KR)
Publication Details
- Journal
- Cancers
- Published
- 2025-12-19
- DOI
- https://doi.org/10.3390/cancers18010018
- Primary Topic
- Cancer Immunotherapy and Biomarkers
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- National Research Foundation
- Korea Health Industry Development Institute
- Ministry of Science and ICT, South Korea