Finding the True Responders: Stratifying dMMR/MSI-H Tumors for ICI Response

<b>Background/Objectives</b>: Immune checkpoint inhibitors (ICIs) show durable efficacy in tumors with deficient mismatch repair (dMMR) or high microsatellite instability (MSI-H), yet clinical responses remain heterogeneous. This study aimed to define immune subgroups within dMMR/MSI-H tumors and develop a reproducible transcriptomic signature predictive of ICI response. <b>Methods</b>: Four MSI-H-enriched cancer types (UCEC, COAD, READ, STAD) from The Cancer Genome Atlas were analyzed. Tumors were stratified by immune cell infiltration (MCP-counter immune composite score) and T-cell-inflamed gene expression profiles (GEP score). Integrating these two axes defined four immune subgroups. Differential expression, random forest feature selection, and pathway enrichment were performed to identify immune programs. A 20-gene immune signature representing the most immune-active subgroup was developed and validated across TCGA, GEO (GSE39582), and IMvigor210 cohorts. <b>Results</b>: Among the four subgroups, the most immune-active group showed strong activation of interferon signaling, antigen presentation, and T-cell-mediated pathways. The 20-gene signature-including CD74, STAT1, TAP1, and HLA-class genes-achieved high reproducibility (mean AUC = 0.95 ± 0.02; accuracy ≈ 89%). In the IMvigor210 cohort, this signature identified tumors with higher PD-L1 blockade response (55.6% vs. 32.8%, <i>p</i> = 0.034) and improved survival trends in the TMB-high subset. <b>Conclusions</b>: The proposed 20-gene signature quantitatively captures immune heterogeneity in dMMR/MSI-H tumors and serves as a practical, interpretable biomarker to identify true ICI responders and guide precision immunotherapy.

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Publication Details

Journal
Cancers
Published
2025-12-19
DOI
https://doi.org/10.3390/cancers18010018
Primary Topic
Cancer Immunotherapy and Biomarkers
Type
article
Field-Weighted Citation Impact
0.00

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article

Finding the True Responders: Stratifying dMMR/MSI-H Tumors for ICI Response

Jun Hee Pyo, Mihyun Kim, Seongwon Na, K. Kim et al.
Cancers
Cancer Immunotherapy and Biomarkers
article

Finding the True Responders: Stratifying dMMR/MSI-H Tumors for ICI Response

Jun Hee Pyo, Mihyun Kim, Seongwon Na, K. Kim, Jisung Jang, Nari Kim
article en

Abstract

<b>Background/Objectives</b>: Immune checkpoint inhibitors (ICIs) show durable efficacy in tumors with deficient mismatch repair (dMMR) or high microsatellite instability (MSI-H), yet clinical responses remain heterogeneous. This study aimed to define immune subgroups within dMMR/MSI-H tumors and develop a reproducible transcriptomic signature predictive of ICI response. <b>Methods</b>: Four MSI-H-enriched cancer types (UCEC, COAD, READ, STAD) from The Cancer Genome Atlas were analyzed. Tumors were stratified by immune cell infiltration (MCP-counter immune composite score) and T-cell-inflamed gene expression profiles (GEP score). Integrating these two axes defined four immune subgroups. Differential expression, random forest feature selection, and pathway enrichment were performed to identify immune programs. A 20-gene immune signature representing the most immune-active subgroup was developed and validated across TCGA, GEO (GSE39582), and IMvigor210 cohorts. <b>Results</b>: Among the four subgroups, the most immune-active group showed strong activation of interferon signaling, antigen presentation, and T-cell-mediated pathways. The 20-gene signature-including CD74, STAT1, TAP1, and HLA-class genes-achieved high reproducibility (mean AUC = 0.95 ± 0.02; accuracy ≈ 89%). In the IMvigor210 cohort, this signature identified tumors with higher PD-L1 blockade response (55.6% vs. 32.8%, <i>p</i> = 0.034) and improved survival trends in the TMB-high subset. <b>Conclusions</b>: The proposed 20-gene signature quantitatively captures immune heterogeneity in dMMR/MSI-H tumors and serves as a practical, interpretable biomarker to identify true ICI responders and guide precision immunotherapy.

CancersVol. 18(1)
Asan Medical Center (KR), University of Ulsan (KR), Korea Pharma (South Korea) (KR), Korea Pharmaceutical and Bio-Pharma Manufacturers Association (KR)
National Research Foundation, Korea Health Industry Development Institute, Ministry of Science and ICT, South Korea
Life in Land
Openalex Percentile: Top 32%
Cancer Immunotherapy and Biomarkers
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