A Near Black Box Parameter Optimizer for NDDO-Descendant Semiempirical Methods: Demonstrations for MNDO and AM1

We provide a detailed description of an enhanced version of our previous geometry-corrected parameter optimization algorithm capable of accounting for reference geometries including all pertinent equations necessary for its implementation. The algorithm directly incorporates the derivatives of key lengths and angles, unlike PARAM, which relies on derived geometric functions. As a demonstration of the utility of our novel algorithm, reparameterizations for MNDO and AM1 using 1187 CHNO molecules in the PM7 training set are reported and compared to analogous results obtained with PARAM program used in the development of the PMx models; additional reparameterizations employing a partition of the full CHNO data set into training and validation subsets were also examined. Our AM1 reparameterizations achieve substantial improvements in the predicted geometrical properties (bond lengths, bond angles, and dihedral angles), demonstrating that the derived geometrical reference functions are ill-suited for parameter optimization and may also inadvertently incentivize smaller force constants for chemical bonds; however, this arises at the cost of decreased accuracies for reaction barrier heights, which is viewed to be a consequence of the absence of nonequilibrium geometries from the training set. Together, our results suggest that judicious parameter refinement could substantially enhance the performance of NDDO-descendant semiempirical models.

Authors

Institutions

Publication Details

Journal
The Journal of Physical Chemistry A
Published
2025-12-22
DOI
https://doi.org/10.1021/acs.jpca.5c06861
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

A Near Black Box Parameter Optimizer for NDDO-Descendant Semiempirical Methods: Demonstrations for MNDO and AM1

Adrian Wee Wen Ong, Steve Yueran Cao, Leong Chuan Kwek, Javier Lim et al.
The Journal of Physical Chemistry A
Machine Learning in Materials Science
article

A Near Black Box Parameter Optimizer for NDDO-Descendant Semiempirical Methods: Demonstrations for MNDO and AM1

Adrian Wee Wen Ong, Steve Yueran Cao, Leong Chuan Kwek, Javier Lim, Leemen Chee Yong Chan
article en

Abstract

We provide a detailed description of an enhanced version of our previous geometry-corrected parameter optimization algorithm capable of accounting for reference geometries including all pertinent equations necessary for its implementation. The algorithm directly incorporates the derivatives of key lengths and angles, unlike PARAM, which relies on derived geometric functions. As a demonstration of the utility of our novel algorithm, reparameterizations for MNDO and AM1 using 1187 CHNO molecules in the PM7 training set are reported and compared to analogous results obtained with PARAM program used in the development of the PMx models; additional reparameterizations employing a partition of the full CHNO data set into training and validation subsets were also examined. Our AM1 reparameterizations achieve substantial improvements in the predicted geometrical properties (bond lengths, bond angles, and dihedral angles), demonstrating that the derived geometrical reference functions are ill-suited for parameter optimization and may also inadvertently incentivize smaller force constants for chemical bonds; however, this arises at the cost of decreased accuracies for reaction barrier heights, which is viewed to be a consequence of the absence of nonequilibrium geometries from the training set. Together, our results suggest that judicious parameter refinement could substantially enhance the performance of NDDO-descendant semiempirical models.

The Journal of Physical Chemistry AVol. 130(1)
Centre for Quantum Technologies (SG), National University of Singapore (SG), Nanyang Technological University (SG), University Hospital of Umeå (SE), UMI MajuLab (SG)
Peace, Justice and strong institutions
Openalex Percentile: Top 49%
Machine Learning in Materials Science
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.