Synthesis of Ni( <scp>ii</scp> ) and Zn( <scp>ii</scp> ) complexes of pyrrolyl dipyrrins and their biomimetic role in catalyzing the hydrolysis of the phospho-ester bond

3-Pyrrolyl BODIPY and α-formyl 3-pyrrolyl BODIPY were used as precursors for the <i>in situ</i> generation of pyrrolyl dipyrrin and α-formyl pyrrolyl dipyrrin ligands, which were then used to synthesize two novel Zn(II) complexes, 1-Zn and 4-Zn, and one Ni(II) complex, 4-Ni, in good yields. The X-ray structures revealed that in 1-Zn and 4-Zn, the appended pyrrole "N" did not participate in coordination with the Zn(II) ion, and the Zn(II) ion coordinated with four nitrogen atoms of the two α-pyrrolyl dipyrrin units in a criss-cross fashion, adopting a distorted tetrahedral geometry. By contrast, in 4-Ni, the Ni(II) centre was coordinated by three pyrrolic nitrogen atoms from the α-pyrrolyl dipyrrin ligand and one water molecule, forming a distorted square planar geometry. The biomimetic role of 1-Zn, 4-Zn and 4-Ni in the hydrolysis of phosphatase was studied in DMF/H<sub>2</sub>O (97.5 : 2.5 v/v) using the disodium salt of <i>para</i>-nitrophenylphosphate (PNPP) as a model substrate. All synthesized complexes were capable of catalyzing the hydrolysis of the phosphoester bond, exhibiting turnover numbers (<i>K</i><sub>cat</sub>) of 3.52 s<sup>-1</sup>, 1.99 s<sup>-1</sup>, and 10.01 s<sup>-1</sup> for 1-Zn, 4-Zn, and 4-Ni, respectively. To the best of our knowledge, this study represents the first report of α-pyrrolyl dipyrrin-based metal complexes functioning as phosphatase imitators under both neutral and alkaline conditions. Among these, the 4-Ni complex displayed superior catalytic activity toward PNPP hydrolysis, which was attributed to the presence of a coordinated water molecule. This coordinated water was proposed to play a dual role-enhancing the interaction between the PO bond and the metal center and facilitating metal-hydroxide activation. The latter effect was more pronounced under basic conditions, where the <i>K</i><sub>cat</sub> value increased from 10.01 s<sup>-1</sup> in a neutral medium to 11.70 s<sup>-1</sup> in a basic medium. A probable mechanism for phosphatase hydrolysis was proposed based on the experimental findings and literature survey. These results not only revealed the phosphatase-like activity of the complex but also demonstrated that owing to the presence of a fluorophoric ligand system, the specific site of phosphoester bond cleavage can be monitored under visible-light irradiation. This dual functionality-catalysis and real-time optical tracking-offers significant potential for biomedical applications.

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Journal
Dalton Transactions
Published
2025-12-20
DOI
https://doi.org/10.1039/d5dt02700d
Primary Topic
Synthesis and Characterization of Pyrroles
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article
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article

Synthesis of Ni( ii ) and Zn( ii ) complexes of pyrrolyl dipyrrins and their biomimetic role in catalyzing the hydrolysis of the phospho-ester bond

Pinky Chauhan, Abani Sarkar, Mangalampalli Ravikanth
Dalton Transactions
Synthesis and Characterization of Pyrroles
article

Synthesis of Ni( ii ) and Zn( ii ) complexes of pyrrolyl dipyrrins and their biomimetic role in catalyzing the hydrolysis of the phospho-ester bond

Pinky Chauhan, Abani Sarkar, Mangalampalli Ravikanth
article en

Abstract

3-Pyrrolyl BODIPY and α-formyl 3-pyrrolyl BODIPY were used as precursors for the <i>in situ</i> generation of pyrrolyl dipyrrin and α-formyl pyrrolyl dipyrrin ligands, which were then used to synthesize two novel Zn(II) complexes, 1-Zn and 4-Zn, and one Ni(II) complex, 4-Ni, in good yields. The X-ray structures revealed that in 1-Zn and 4-Zn, the appended pyrrole "N" did not participate in coordination with the Zn(II) ion, and the Zn(II) ion coordinated with four nitrogen atoms of the two α-pyrrolyl dipyrrin units in a criss-cross fashion, adopting a distorted tetrahedral geometry. By contrast, in 4-Ni, the Ni(II) centre was coordinated by three pyrrolic nitrogen atoms from the α-pyrrolyl dipyrrin ligand and one water molecule, forming a distorted square planar geometry. The biomimetic role of 1-Zn, 4-Zn and 4-Ni in the hydrolysis of phosphatase was studied in DMF/H<sub>2</sub>O (97.5 : 2.5 v/v) using the disodium salt of <i>para</i>-nitrophenylphosphate (PNPP) as a model substrate. All synthesized complexes were capable of catalyzing the hydrolysis of the phosphoester bond, exhibiting turnover numbers (<i>K</i><sub>cat</sub>) of 3.52 s<sup>-1</sup>, 1.99 s<sup>-1</sup>, and 10.01 s<sup>-1</sup> for 1-Zn, 4-Zn, and 4-Ni, respectively. To the best of our knowledge, this study represents the first report of α-pyrrolyl dipyrrin-based metal complexes functioning as phosphatase imitators under both neutral and alkaline conditions. Among these, the 4-Ni complex displayed superior catalytic activity toward PNPP hydrolysis, which was attributed to the presence of a coordinated water molecule. This coordinated water was proposed to play a dual role-enhancing the interaction between the PO bond and the metal center and facilitating metal-hydroxide activation. The latter effect was more pronounced under basic conditions, where the <i>K</i><sub>cat</sub> value increased from 10.01 s<sup>-1</sup> in a neutral medium to 11.70 s<sup>-1</sup> in a basic medium. A probable mechanism for phosphatase hydrolysis was proposed based on the experimental findings and literature survey. These results not only revealed the phosphatase-like activity of the complex but also demonstrated that owing to the presence of a fluorophoric ligand system, the specific site of phosphoester bond cleavage can be monitored under visible-light irradiation. This dual functionality-catalysis and real-time optical tracking-offers significant potential for biomedical applications.

Dalton TransactionsVol. 55(3)
Indian Institute of Technology Bombay (IN)
Clean water and sanitation
Openalex Percentile: Top 34%
Synthesis and Characterization of Pyrroles
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