Hierarchical Deep Learning Framework for Mapping Honey-Producing Tree Species in Dense Forest Ecosystems Using Sentinel-2 Imagery

The sustainability of apiculture within Mediterranean forest ecosystems is contingent upon the extent and health of melliferous tree habitats. This study outlines a five-year initiative (2020–2024) aimed at mapping and monitoring four principal honey-producing tree species—pine (Pinus halepensis and Pinus nigra), Greek fir (Abies cephalonica), oak (Quercus ithaburensis subsp. macrolepis), and chestnut (Castanea sativa)—across Evia, Greece. This is achieved through the utilization of high-resolution Sentinel-2 satellite imagery in conjunction with a hierarchical deep learning framework. Distinct from prior vegetation mapping endeavors, this research introduces an innovative application of a hierarchical framework for species-level semantic segmentation of apicultural flora, employing a U-Net convolutional neural network to capture fine-scale spatial and temporal dynamics. The proposed framework first stratifies forests into broadleaf and coniferous types using Copernicus DLT data, and subsequently applies two specialized U-Net models trained on Sentinel-2 NDVI time series and DEM-derived topographic variables to (i) discriminate pine from fir within coniferous forests and (ii) distinguish oak from chestnut within broadleaf stands. This hierarchical decomposition reduces spectral confusion among structurally similar species and enables fine-scale semantic segmentation of apicultural flora. Our hierarchical framework achieves 92.1% overall accuracy, significantly outperforming traditional multiclass approaches (89.5%) and classical ML methods (76.9%). The results demonstrate the framework’s efficacy in accurately delineating species distributions, quantifying the ecological and economic impacts of the catastrophic 2021 forest fires, and projecting long-term habitat recovery trajectories. The integration of a novel hierarchical approach with Deep Learning-driven monitoring of climate- and disturbance-driven changes in honey-producing habitats marks a significant step towards more effective assessment and management of four major beekeeping tree species. These findings highlight the significance of such methodologies in guiding conservation, restoration, and adaptive management strategies, ultimately supporting resilient apiculture and safeguarding ecosystem services in fire-prone Mediterranean landscapes.