Experimental demonstration of kinetic proofreading inherited in ligation-based information replication

We experimentally demonstrate that information replication by templated ligation of DNA strands inherits a kinetic proofreading mechanism and achieves significant error suppression through cascade replication. A simple simulation model derived from the experimental results shows that templated ligation has a significant advantage over replication by polymerization for error suppression of long strands. Specifically, longer chains show lower error rates, significantly distinct from the chain-growth polymerization where errors typically accumulate with chain length. This mechanism provides a plausible route for high-fidelity replication in prebiotic chemistry and illustrates how physical principles such as nonequilibrium kinetics and network architecture can drive reliable molecular information replication. The approach also offers strategies for error suppression in biotechnology.

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Publication Details

Journal
Physical Review Research
Published
2025-10-23
DOI
https://doi.org/10.1103/pdhn-ncpl
Primary Topic
Origins and Evolution of Life
Type
article
Field-Weighted Citation Impact
0.00

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article

Experimental demonstration of kinetic proofreading inherited in ligation-based information replication

Physical Review Research
Origins and Evolution of Life
article

Experimental demonstration of kinetic proofreading inherited in ligation-based information replication

article en

Abstract

We experimentally demonstrate that information replication by templated ligation of DNA strands inherits a kinetic proofreading mechanism and achieves significant error suppression through cascade replication. A simple simulation model derived from the experimental results shows that templated ligation has a significant advantage over replication by polymerization for error suppression of long strands. Specifically, longer chains show lower error rates, significantly distinct from the chain-growth polymerization where errors typically accumulate with chain length. This mechanism provides a plausible route for high-fidelity replication in prebiotic chemistry and illustrates how physical principles such as nonequilibrium kinetics and network architecture can drive reliable molecular information replication. The approach also offers strategies for error suppression in biotechnology.

Physical Review ResearchVol. 7(4)
Tohoku University (JP)
Japan Society for the Promotion of Science, Exploratory Research for Advanced Technology
Openalex Percentile: Top 37%
Origins and Evolution of Life
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