Structure of racemic calcium 5-methyltetrahydrofolate trihydrate from synchrotron powder diffraction data and density functional theory

The crystal structure of the racemic title compound, poly[[(μ-(2<i>S</i>)-2-{[4-({[(6<i>S</i>)-2-amino-5-methyl-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]formamido}pentanedioato)diaquacalcium(II)] monohydrate], {[Ca(C<sub>20</sub>H<sub>23</sub>N<sub>7</sub>O<sub>6</sub>)(H<sub>2</sub>O)<sub>2</sub>]·H<sub>2</sub>O} <sub><i>n</i></sub> (space group <i>P</i>2<sub>1</sub>/<i>c</i>) has been solved and refined using synchrotron X-ray powder diffraction data and optimized using density functional theory techniques. The structure consists of alternating hydro-philic (Ca/O) and hydro-phobic layers lying parallel to the <i>bc</i> plane. An extensive network of O-H⋯O hydrogen bonds link the Ca coordination spheres within the layers. The anions link the Ca<sup>2+</sup> ions into chains propagating along the <i>b</i>-axis direction. N-H⋯O hydrogen bonds link the Ca/O units and the anion layers. The calcium ion is 6-coordinate (distorted octa-hedral), and is isolated. The coordination sphere consists of two water mol-ecules, a chelated carboxyl-ate group, a monodentate carboxyl-ate group, and a carbonyl group. Both the Ca coordination geometry and the extended structure are very different than that of the previously determined enanti-opure calcium l-5-methyl-tetra-hydro-folate trihydrate (Form I).

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Publication Details

Journal
Acta Crystallographica Section E Crystallographic Communications
Published
2025-11-27
DOI
https://doi.org/10.1107/s2056989025010515
Primary Topic
X-ray Diffraction in Crystallography
Type
article
Field-Weighted Citation Impact
0.00

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article

Structure of racemic calcium 5-methyltetrahydrofolate trihydrate from synchrotron powder diffraction data and density functional theory

Acta Crystallographica Section E Crystallographic Communications
X-ray Diffraction in Crystallography
article

Structure of racemic calcium 5-methyltetrahydrofolate trihydrate from synchrotron powder diffraction data and density functional theory

article en

Abstract

The crystal structure of the racemic title compound, poly[[(μ-(2<i>S</i>)-2-{[4-({[(6<i>S</i>)-2-amino-5-methyl-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]formamido}pentanedioato)diaquacalcium(II)] monohydrate], {[Ca(C<sub>20</sub>H<sub>23</sub>N<sub>7</sub>O<sub>6</sub>)(H<sub>2</sub>O)<sub>2</sub>]·H<sub>2</sub>O} <sub><i>n</i></sub> (space group <i>P</i>2<sub>1</sub>/<i>c</i>) has been solved and refined using synchrotron X-ray powder diffraction data and optimized using density functional theory techniques. The structure consists of alternating hydro-philic (Ca/O) and hydro-phobic layers lying parallel to the <i>bc</i> plane. An extensive network of O-H⋯O hydrogen bonds link the Ca coordination spheres within the layers. The anions link the Ca<sup>2+</sup> ions into chains propagating along the <i>b</i>-axis direction. N-H⋯O hydrogen bonds link the Ca/O units and the anion layers. The calcium ion is 6-coordinate (distorted octa-hedral), and is isolated. The coordination sphere consists of two water mol-ecules, a chelated carboxyl-ate group, a monodentate carboxyl-ate group, and a carbonyl group. Both the Ca coordination geometry and the extended structure are very different than that of the previously determined enanti-opure calcium l-5-methyl-tetra-hydro-folate trihydrate (Form I).

Acta Crystallographica Section E Crystallographic CommunicationsVol. 82(1)
North Central College (US)
U.S. Department of Energy, Office of Science, Basic Energy Sciences, Argonne National Laboratory
Openalex Percentile: Top 55%
X-ray Diffraction in Crystallography
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