Automated data extraction model for the USIDNET registry: Bigger, faster, and better data collection

The United States Immunodeficiency Network (USIDNET) is an NIH-funded research consortium that advances scientific investigation on inborn errors of immunity (IEIs). Formerly, USIDNET registry data were collected via an opt-in system with patient informed consent. The current registry uses semiautomated, de-identified data extraction from EPIC with a consent waiver. This study was performed to assess whether the new method improved enrollment using data from one site. Diagnoses, sex, and age within the new (n = 2,796) and old (n = 551) registries were defined. The new registry enrolled more subjects and had six times more clinical features recorded per patient on average and 22 times more laboratory data recorded per patient. Response to queries is much more rapid, with execution of a database query within a day. There were differences in enrollment demographics depending on underlying diagnosis. The design of the new USIDNET registry may better capture a greater number and representation of patients compared to the old registry.

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Publication Details

Journal
Journal of Human Immunity
Published
2025-11-08
DOI
https://doi.org/10.70962/jhi.20250118
Primary Topic
Immunodeficiency and Autoimmune Disorders
Type
article
Field-Weighted Citation Impact
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article

Automated data extraction model for the USIDNET registry: Bigger, faster, and better data collection

Journal of Human Immunity
Immunodeficiency and Autoimmune Disorders
article

Automated data extraction model for the USIDNET registry: Bigger, faster, and better data collection

article en

Abstract

The United States Immunodeficiency Network (USIDNET) is an NIH-funded research consortium that advances scientific investigation on inborn errors of immunity (IEIs). Formerly, USIDNET registry data were collected via an opt-in system with patient informed consent. The current registry uses semiautomated, de-identified data extraction from EPIC with a consent waiver. This study was performed to assess whether the new method improved enrollment using data from one site. Diagnoses, sex, and age within the new (n = 2,796) and old (n = 551) registries were defined. The new registry enrolled more subjects and had six times more clinical features recorded per patient on average and 22 times more laboratory data recorded per patient. Response to queries is much more rapid, with execution of a database query within a day. There were differences in enrollment demographics depending on underlying diagnosis. The design of the new USIDNET registry may better capture a greater number and representation of patients compared to the old registry.

Journal of Human ImmunityVol. 2(1)
Cincinnati Children's Hospital Medical Center (US), Nationwide Children's Hospital (US), Children's Hospital of Philadelphia (US), Columbia University Irving Medical Center (US), UCSF Benioff Children's Hospital (US), University of Pennsylvania (US), University of Cincinnati Medical Center (US), Icahn School of Medicine at Mount Sinai (US)
Openalex Percentile: Top 41%
Immunodeficiency and Autoimmune Disorders
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