EUTROPY: A Python-based software optimized with Just-In-Time compilation for simulating eutrophication dynamics in aquatic systems

This study presents EUTROPY, an efficient, open-source modeling tool developed in Python for simulating primary production and investigating eutrophication dynamics. Although compiled languages such as Fortran and C ++ are preferred in numerical modeling, Python was selected for its usability. Performance was enhanced using Numba for just-in-time (JIT) compilation, achieving speedups up to 40 times and outperforming a Fortran-based model. In addition, a Shiny interface supports interactive post-processing and visualization. This approach eliminates the two-language problem, enabling both simulation and analysis in one environment, making EUTROPY practical for academic use and a foundation for future applications in environmental management.

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Publication Details

Journal
SoftwareX
Published
2025-11-06
DOI
https://doi.org/10.1016/j.softx.2025.102430
Primary Topic
Marine and coastal ecosystems
Type
article
Field-Weighted Citation Impact
0.00
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article

EUTROPY: A Python-based software optimized with Just-In-Time compilation for simulating eutrophication dynamics in aquatic systems

SoftwareX
Marine and coastal ecosystems
article

EUTROPY: A Python-based software optimized with Just-In-Time compilation for simulating eutrophication dynamics in aquatic systems

article en

Abstract

This study presents EUTROPY, an efficient, open-source modeling tool developed in Python for simulating primary production and investigating eutrophication dynamics. Although compiled languages such as Fortran and C ++ are preferred in numerical modeling, Python was selected for its usability. Performance was enhanced using Numba for just-in-time (JIT) compilation, achieving speedups up to 40 times and outperforming a Fortran-based model. In addition, a Shiny interface supports interactive post-processing and visualization. This approach eliminates the two-language problem, enabling both simulation and analysis in one environment, making EUTROPY practical for academic use and a foundation for future applications in environmental management.

SoftwareXVol. 32
Klaipėda University (LT), Istituto di Scienze Marine del Consiglio Nazionale delle Ricerche (IT), National Research Council (IT)
Life in Land
Openalex Percentile: Top 36%
Marine and coastal ecosystems
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