P217 | AN AUTOMATED CARTRIDGE-BASED MICROFLUIDIC SYSTEM FOR REAL-TIME QUANTIFICATION OF BCR::ABL1 TRANSCRIPTS IN CHRONIC MYELOID LEUKEMIA: AN ITALIAN EXPERIENCE

Introduction: Chronic myeloid leukemia (CML) is a hematologic malignancy characterized by the BCR::ABL1 fusion gene. About 99% of cases express the e13a2 or e14a2 transcript, encoding the p210 protein with abnormal tyrosine kinase activity. The gold standard for CML monitoring relies on BCR::ABL1 transcript quantification by reverse transcription quantitative PCR (RT-qPCR). The Xpert<sup>®</sup> BCR-ABL Ultra assay is an automated diagnostic test designed to quantify BCR::ABL1 and ABL1 mRNA in patients with the e13a2/e14a2 transcript, performing RNA extraction, cDNA synthesis, nested real-time PCR, and detection in a closed cartridge system in under 3 hours. This study assessed the Xpert<sup>®</sup> BCR-ABL Ultra assay as a potential alternative to methods described in the Italian Laboratory Recommendations (RIL). Methods and Results: 129 leftover peripheral blood samples from CML patients at different disease stages were analyzed: 66 between MR 3.0 (0.1% IS) and MR 1.0 (10% IS), 27 at MR 4.0 (0.01% IS), 16 at MR 4.5 (0.0032% IS), and 20 undetectable or at MR 5 (<0.001% IS). Analyses were conducted in four Italian CML LabNet reference laboratories, each employing the Xpert<sup>®</sup> BCR-ABL Ultra assay and their validated local method. Additionally, 20 healthy donor samples and two reference materials (ACROMETRIX BCR::ABL1 Panel and UK NEQAS controls) were tested. Repeatability for both methods was excellent, with coefficients of variation consistently <1%. Concordance was evaluated according to EUTOS criteria, with all laboratories meeting at least 2 out of 3 criteria. Bland-Altman analysis showed no significant bias between methods. For each method and disease level, coefficient of repeatability, standard deviation, mean %IS, coefficient of variation, bias, and 95% limits of agreement were calculated and reported in the Table. The overall concordance for MR values was 71.3% using the European LeukemiaNet guidelines, improving to 89.9% when applying the formula for calculating logarithmic reduction: 2-log10(%IS). The Xpert<sup>®</sup> system also demonstrated good performance on negative samples and reference materials. Conclusion: Statistical analysis of data obtained with different systems and multiple types of material demonstrated a strong and consistent correlation across all disease levels. Xpert<sup>®</sup> BCR-ABL Ultra proved to be a robust, rapid, and efficient tool, representing a valuable alternative to clinical methods currently validated within the Italian CML LabNet.

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SHILAP Revista de lepidopterología
Published
2025-09-01
Primary Topic
Chronic Myeloid Leukemia Treatments
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article

P217 | AN AUTOMATED CARTRIDGE-BASED MICROFLUIDIC SYSTEM FOR REAL-TIME QUANTIFICATION OF BCR::ABL1 TRANSCRIPTS IN CHRONIC MYELOID LEUKEMIA: AN ITALIAN EXPERIENCE

SHILAP Revista de lepidopterología
Chronic Myeloid Leukemia Treatments
article

P217 | AN AUTOMATED CARTRIDGE-BASED MICROFLUIDIC SYSTEM FOR REAL-TIME QUANTIFICATION OF BCR::ABL1 TRANSCRIPTS IN CHRONIC MYELOID LEUKEMIA: AN ITALIAN EXPERIENCE

article en

Abstract

Introduction: Chronic myeloid leukemia (CML) is a hematologic malignancy characterized by the BCR::ABL1 fusion gene. About 99% of cases express the e13a2 or e14a2 transcript, encoding the p210 protein with abnormal tyrosine kinase activity. The gold standard for CML monitoring relies on BCR::ABL1 transcript quantification by reverse transcription quantitative PCR (RT-qPCR). The Xpert<sup>®</sup> BCR-ABL Ultra assay is an automated diagnostic test designed to quantify BCR::ABL1 and ABL1 mRNA in patients with the e13a2/e14a2 transcript, performing RNA extraction, cDNA synthesis, nested real-time PCR, and detection in a closed cartridge system in under 3 hours. This study assessed the Xpert<sup>®</sup> BCR-ABL Ultra assay as a potential alternative to methods described in the Italian Laboratory Recommendations (RIL). Methods and Results: 129 leftover peripheral blood samples from CML patients at different disease stages were analyzed: 66 between MR 3.0 (0.1% IS) and MR 1.0 (10% IS), 27 at MR 4.0 (0.01% IS), 16 at MR 4.5 (0.0032% IS), and 20 undetectable or at MR 5 (<0.001% IS). Analyses were conducted in four Italian CML LabNet reference laboratories, each employing the Xpert<sup>®</sup> BCR-ABL Ultra assay and their validated local method. Additionally, 20 healthy donor samples and two reference materials (ACROMETRIX BCR::ABL1 Panel and UK NEQAS controls) were tested. Repeatability for both methods was excellent, with coefficients of variation consistently <1%. Concordance was evaluated according to EUTOS criteria, with all laboratories meeting at least 2 out of 3 criteria. Bland-Altman analysis showed no significant bias between methods. For each method and disease level, coefficient of repeatability, standard deviation, mean %IS, coefficient of variation, bias, and 95% limits of agreement were calculated and reported in the Table. The overall concordance for MR values was 71.3% using the European LeukemiaNet guidelines, improving to 89.9% when applying the formula for calculating logarithmic reduction: 2-log10(%IS). The Xpert<sup>®</sup> system also demonstrated good performance on negative samples and reference materials. Conclusion: Statistical analysis of data obtained with different systems and multiple types of material demonstrated a strong and consistent correlation across all disease levels. Xpert<sup>®</sup> BCR-ABL Ultra proved to be a robust, rapid, and efficient tool, representing a valuable alternative to clinical methods currently validated within the Italian CML LabNet.

SHILAP Revista de lepidopterología
University of Pisa (IT), San Salvatore Hospital (IT), Department of Medical Sciences (BY), CEINGE Biotecnologie Avanzate Franco Salvatore (Italy) (IT), Istituto Oncologico Romagnolo (IT), University of Turin (IT)
Openalex Percentile: Top 32%
Chronic Myeloid Leukemia Treatments
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