Use Case (Pilot) 11: BrAPI4PSI - BrAPI Integration on PSI Hardware

BrAPI4PSI is developing a Breeding API (BrAPI) integration for phenotyping images recorded on PSI phenotyping systems in European high-throughput phenotyping facilities together with the company PSI. It is being developed as an example for the IPK PhenoSphere PhenoCrane system, which was built by PSI for the IPK Gatersleben. The PhenoSphere system currently uses a proprietary data management system to store, access, and analyze the images. To adhere to the FAIR principles the research data management should use open standards such as BrAPI (https://brapi.org/) and ISA-JSON in compliance with the MIAPPE standard. For experiment registration, the ISA Wizard is currently being considered to assist the user in creating FAIR- and ISA-compliant metadata. A BrAPI integration will FAIRify the PhenoCrane images captured atthe IPK Gatersleben.

Institutions

Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2025-10-20
DOI
https://doi.org/10.5281/zenodo.17396369
Primary Topic
Research Data Management Practices
Type
article
Field-Weighted Citation Impact
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article

Use Case (Pilot) 11: BrAPI4PSI - BrAPI Integration on PSI Hardware

Zenodo (CERN European Organization for Nuclear Research)
Research Data Management Practices
article

Use Case (Pilot) 11: BrAPI4PSI - BrAPI Integration on PSI Hardware

article en

Abstract

BrAPI4PSI is developing a Breeding API (BrAPI) integration for phenotyping images recorded on PSI phenotyping systems in European high-throughput phenotyping facilities together with the company PSI. It is being developed as an example for the IPK PhenoSphere PhenoCrane system, which was built by PSI for the IPK Gatersleben. The PhenoSphere system currently uses a proprietary data management system to store, access, and analyze the images. To adhere to the FAIR principles the research data management should use open standards such as BrAPI (https://brapi.org/) and ISA-JSON in compliance with the MIAPPE standard. For experiment registration, the ISA Wizard is currently being considered to assist the user in creating FAIR- and ISA-compliant metadata. A BrAPI integration will FAIRify the PhenoCrane images captured atthe IPK Gatersleben.

Zenodo (CERN European Organization for Nuclear Research)
Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) (DE), Photon Systems Instruments (Czechia) (CZ)
Partnerships for the goals
Openalex Percentile: Top 33%
Research Data Management Practices
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Use Case (Pilot) 11: BrAPI4PSI - BrAPI Integration on PSI Hardware · Zenodo (CERN European Organization for Nuclear Research) (2025) | TGRS Research Map | TGRS