cgDist: Nucleotide-Level Distance Calculation from cgMLST Allelic Profiles

Supplementary Data of "cgDist: An Enhanced Algorithm for Efficient Calculation of pairwise SNP and InDel differences from Core Genome Multilocus Sequence Typing" This dataset contains all distance matrices, allelic profiles, and recombination analysis results supporting the cgDist paper on enhanced bacterial genomic surveillance through nucleotide-level distance calculation from cgMLST profiles.BeOne Datasets BeOne Project: https://onehealthejp.eu/projects/foodborne-zoonoses/jrp-beone Listeria (Lm-1426): https://zenodo.org/records/7802702 Listeria (Lm-1874): https://zenodo.org/records/7230003 Salmonella (Se-1434): https://zenodo.org/records/7230091 Salmonella (Se-1540): https://zenodo.org/records/7802723 Related resources: Chewie-NS Schemas: https://chewbbaca.online/ cgDist Algorithm (GitHub): https://github.com/genpat-it/cgDist For more details on the supplementary data and code availability, please refer to the associated paper.