Structured Chemical Reaction Modeling with Multitask Graph Neural Networks

This work introduces MARCC (Mapping-Assisted Reaction Center and Classification), a multitask graph neural network for modeling chemical reactions in a structured manner.MARCC jointly learns atom mapping (graph matching), reaction center prediction (binary classification), and reaction classification (global classification) within a unified architecture.By coupling these interdependent tasks, the model captures the structural relationships between local reactivity and global transformation semantics.Experiments on the USPTO-50K benchmark demonstrate that multitask supervision improves both accuracy and interpretability compared to single-task and product-only baselines.The framework provides a general approach for graph-based reaction understanding and structured chemical prediction.

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2025-10-14
DOI
https://doi.org/10.5281/zenodo.17352841
Primary Topic
Machine Learning in Materials Science
Type
article
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article

Structured Chemical Reaction Modeling with Multitask Graph Neural Networks

Zenodo (CERN European Organization for Nuclear Research)
Machine Learning in Materials Science
article

Structured Chemical Reaction Modeling with Multitask Graph Neural Networks

article en

Abstract

This work introduces MARCC (Mapping-Assisted Reaction Center and Classification), a multitask graph neural network for modeling chemical reactions in a structured manner.MARCC jointly learns atom mapping (graph matching), reaction center prediction (binary classification), and reaction classification (global classification) within a unified architecture.By coupling these interdependent tasks, the model captures the structural relationships between local reactivity and global transformation semantics.Experiments on the USPTO-50K benchmark demonstrate that multitask supervision improves both accuracy and interpretability compared to single-task and product-only baselines.The framework provides a general approach for graph-based reaction understanding and structured chemical prediction.

Zenodo (CERN European Organization for Nuclear Research)
University of Milan (IT), Aalto University (FI)
Industry, innovation and infrastructure
Openalex Percentile: Top 58%
Machine Learning in Materials Science
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