Chemical-induced Disease Relation Extraction:Graph Reasoning Method Based on Evidence Focusing

To address the problem of existing methods focusing too much on global information while neglecting a small amount of evidence clues and local mention interactions when mining the interaction between chemicals and diseases,a mention level document-level relation extraction method based on evidence focusing(EF-MUnet) is proposed.This method first models mention features based on context aware strategies and captures local interactions between adjacent mentions using two-dimensional convolution network.Secondly,to avoid irrelevant context interference,two evidence focusing strategies ATT-EF and RL-EF are proposed.The former uses similarity as a measure of evidence clues,while the latter uses reinforcement learning to unsupervised learn the optimal evidence extraction policy with the help of delayed feedback.Finally,U-net networks are used to capture global features at the entity level and fully explore semantic relationships.Experimental results show that compared with existing me-thods,EF-MUnet's F1 score improves by 9.7% on the biomedical dataset CDR,and it has more advantages in extracting inter-sentence relations.In addition,EF-MUnet achieves the highest accuracy of 98.6% on the dataset DMI for extracting interactions between drug and mutation,proving that it is an effective biomedical relation extraction method with good generalization ability.

Publication Details

Journal
SHILAP Revista de lepidopterología
Published
2024-10-01
DOI
https://doi.org/10.11896/jsjkx.230800111
Primary Topic
Evolution and Paleontology Studies
Type
article
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article

Chemical-induced Disease Relation Extraction:Graph Reasoning Method Based on Evidence Focusing

SHILAP Revista de lepidopterología
Evolution and Paleontology Studies
article

Chemical-induced Disease Relation Extraction:Graph Reasoning Method Based on Evidence Focusing

article en

Abstract

To address the problem of existing methods focusing too much on global information while neglecting a small amount of evidence clues and local mention interactions when mining the interaction between chemicals and diseases,a mention level document-level relation extraction method based on evidence focusing(EF-MUnet) is proposed.This method first models mention features based on context aware strategies and captures local interactions between adjacent mentions using two-dimensional convolution network.Secondly,to avoid irrelevant context interference,two evidence focusing strategies ATT-EF and RL-EF are proposed.The former uses similarity as a measure of evidence clues,while the latter uses reinforcement learning to unsupervised learn the optimal evidence extraction policy with the help of delayed feedback.Finally,U-net networks are used to capture global features at the entity level and fully explore semantic relationships.Experimental results show that compared with existing me-thods,EF-MUnet's F1 score improves by 9.7% on the biomedical dataset CDR,and it has more advantages in extracting inter-sentence relations.In addition,EF-MUnet achieves the highest accuracy of 98.6% on the dataset DMI for extracting interactions between drug and mutation,proving that it is an effective biomedical relation extraction method with good generalization ability.

SHILAP Revista de lepidopterología
Quality Education
Openalex Percentile: Top 16%
Evolution and Paleontology Studies
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