Accelerated Fibroblast Differentiation Prediction via Multi-Modal Graph Neural Networks in Idiopathic Pulmonary Fibrosis (IPF)

**Abstract:** Idiopathic Pulmonary Fibrosis (IPF) is a progressive and fatal lung disease characterized by excessive fibroblast differentiation and extracellular matrix deposition. Current diagnostic and prognostic methods lack sensitivity and specificity for early intervention. This paper proposes a novel framework leveraging multi-modal graph neural networks (MMGNNs) to predict fibroblast differentiation trajectories from patient-derived data, accelerating research and enabling personalized therapeutic strategies. Our approach integrates transcriptomic, proteomic, and imaging data—specifically, high-resolution computed tomography (HRCT) scans—into a unified graph representation. This allows for a holistic view of IPF pathogenesis and provides significantly improved prediction accuracy compared to single-modality models. The system aims for immediate commercializability through integration into clinical diagnostic pipelines and pharmaceutical drug discovery platforms, potentially revolutionizing IPF management.

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2025-09-27
DOI
https://doi.org/10.5281/zenodo.17211624
Primary Topic
Land Use and Ecosystem Services
Type
article
Field-Weighted Citation Impact
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article

Accelerated Fibroblast Differentiation Prediction via Multi-Modal Graph Neural Networks in Idiopathic Pulmonary Fibrosis (IPF)

Zenodo (CERN European Organization for Nuclear Research)
Land Use and Ecosystem Services
article

Accelerated Fibroblast Differentiation Prediction via Multi-Modal Graph Neural Networks in Idiopathic Pulmonary Fibrosis (IPF)

article en

Abstract

**Abstract:** Idiopathic Pulmonary Fibrosis (IPF) is a progressive and fatal lung disease characterized by excessive fibroblast differentiation and extracellular matrix deposition. Current diagnostic and prognostic methods lack sensitivity and specificity for early intervention. This paper proposes a novel framework leveraging multi-modal graph neural networks (MMGNNs) to predict fibroblast differentiation trajectories from patient-derived data, accelerating research and enabling personalized therapeutic strategies. Our approach integrates transcriptomic, proteomic, and imaging data—specifically, high-resolution computed tomography (HRCT) scans—into a unified graph representation. This allows for a holistic view of IPF pathogenesis and provides significantly improved prediction accuracy compared to single-modality models. The system aims for immediate commercializability through integration into clinical diagnostic pipelines and pharmaceutical drug discovery platforms, potentially revolutionizing IPF management.

Zenodo (CERN European Organization for Nuclear Research)
Freed–Hardeman University (US)
Good health and well-being
Openalex Percentile: Top 48%
Land Use and Ecosystem Services
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