Supplementary Files, Assessing Probe Reliability: Functional Group–specific Biases Revealed by Interactome-wide Docking of General Anesthetics

This dataset contains the docking poses, source code, and analysis scripts associated with our computational docking study of anesthetic compounds, including Propofol (PFLs) and Etomidate (ETOs). These compounds were docked against various neuronal and model receptors using QVina-W. BindingAffinities.zip: Docking results for all ligands, in CSV. TopOverlapped.zip: Overlapped receptors in the top 25% strongest-binding targets for selected ligand pairs, with pose-matching annotations, in CSV. DockingPose-PFLs.zip: Docking results for Propofol analogs, in PDBQT format. DockingPose-ETOs.zip: Docking results for Etomidate analogs, in PDBQT format. Receptors.zip: All receptor structures used for docking, prepared in PDBQT format. SourceCode.ipynb: Jupyter notebook containing the automated docking pipeline using QVina-w. Analysis.ipynb: Jupyter notebook for post-docking analysis, pose comparison, and SDF detection.

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2025-04-05
DOI
https://doi.org/10.5281/zenodo.15161140
Primary Topic
Geochemistry and Geologic Mapping
Type
article
Field-Weighted Citation Impact
0.00
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article

Supplementary Files, Assessing Probe Reliability: Functional Group–specific Biases Revealed by Interactome-wide Docking of General Anesthetics

Zenodo (CERN European Organization for Nuclear Research)
Geochemistry and Geologic Mapping
article

Supplementary Files, Assessing Probe Reliability: Functional Group–specific Biases Revealed by Interactome-wide Docking of General Anesthetics

article en

Abstract

This dataset contains the docking poses, source code, and analysis scripts associated with our computational docking study of anesthetic compounds, including Propofol (PFLs) and Etomidate (ETOs). These compounds were docked against various neuronal and model receptors using QVina-W. BindingAffinities.zip: Docking results for all ligands, in CSV. TopOverlapped.zip: Overlapped receptors in the top 25% strongest-binding targets for selected ligand pairs, with pose-matching annotations, in CSV. DockingPose-PFLs.zip: Docking results for Propofol analogs, in PDBQT format. DockingPose-ETOs.zip: Docking results for Etomidate analogs, in PDBQT format. Receptors.zip: All receptor structures used for docking, prepared in PDBQT format. SourceCode.ipynb: Jupyter notebook containing the automated docking pipeline using QVina-w. Analysis.ipynb: Jupyter notebook for post-docking analysis, pose comparison, and SDF detection.

Zenodo (CERN European Organization for Nuclear Research)
California University of Pennsylvania (US)
Openalex Percentile: Top 49%
Geochemistry and Geologic Mapping
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Supplementary Files, Assessing Probe Reliability: Functional Group–specific Biases Revealed by Interactome-wide Docking of General Anesthetics · Zenodo (CERN European Organization for Nuclear Research) (2025) | TGRS Research Map | TGRS