Reachability in Deletion-Only Chemical Reaction Networks

For general discrete Chemical Reaction Networks (CRNs), the fundamental problem of reachability - the question of whether a target configuration can be produced from a given initial configuration - was recently shown to be Ackermann-complete. However, many open questions remain about which features of the CRN model drive this complexity. We study a restricted class of CRNs with void rules, reactions that only decrease species counts. We further examine this regime in the motivated model of step CRNs, which allow additional species to be introduced in discrete stages. With and without steps, we characterize the complexity of the reachability problem for CRNs with void rules. We show that, without steps, reachability remains polynomial-time solvable for bimolecular systems but becomes NP-complete for larger reactions. Conversely, with just a single step, reachability becomes NP-complete even for bimolecular systems. Our results provide a nearly complete classification of void-rule reachability problems into tractable and intractable cases, with only a single exception.

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Publication Details

Journal
DROPS (Schloss Dagstuhl – Leibniz Center for Informatics)
Published
2025-01-01
DOI
https://doi.org/10.4230/lipics.dna.31.3
Primary Topic
Water Quality and Resources Studies
Type
article
Field-Weighted Citation Impact
0.00

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article

Reachability in Deletion-Only Chemical Reaction Networks

DROPS (Schloss Dagstuhl – Leibniz Center for Informatics)
Water Quality and Resources Studies
article

Reachability in Deletion-Only Chemical Reaction Networks

article en

Abstract

For general discrete Chemical Reaction Networks (CRNs), the fundamental problem of reachability - the question of whether a target configuration can be produced from a given initial configuration - was recently shown to be Ackermann-complete. However, many open questions remain about which features of the CRN model drive this complexity. We study a restricted class of CRNs with void rules, reactions that only decrease species counts. We further examine this regime in the motivated model of step CRNs, which allow additional species to be introduced in discrete stages. With and without steps, we characterize the complexity of the reachability problem for CRNs with void rules. We show that, without steps, reachability remains polynomial-time solvable for bimolecular systems but becomes NP-complete for larger reactions. Conversely, with just a single step, reachability becomes NP-complete even for bimolecular systems. Our results provide a nearly complete classification of void-rule reachability problems into tractable and intractable cases, with only a single exception.

DROPS (Schloss Dagstuhl – Leibniz Center for Informatics)
The University of Texas Rio Grande Valley (US), Massachusetts Institute of Technology (US)
National Science Foundation
Life in Land
Openalex Percentile: Top 55%
Water Quality and Resources Studies
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Reachability in Deletion-Only Chemical Reaction Networks · DROPS (Schloss Dagstuhl – Leibniz Center for Informatics) (2025) | TGRS Research Map | TGRS