Session 2 : <em>Creating a User-friendly Shiny App for Reproducible Two-Sample Mendelian Randomization Studies</em>

We present a Shiny app that supports and facilitates two-sample Mendelian randomization studies with genome-wide association study (GWAS) summary statistics. The proliferation of GWAS and the sharing of their marginal SNP association statistics have enabled researchers to address causal inference questions between two complex traits. Two-sample Mendelian randomization posits a causal relationship between a putative exposure and a putative outcome. Our Shiny app will enable researchers to input GWAS summary statistics for the putative outcome and putative exposure. The app supports diverse sensitivity analyses to assess the assumptions that underlie Mendelian randomization. To ensure computational reproducibility, the user can download a Rmarkdown file with all analysis code from our app. We also briefly discuss anticipated issues with app deployment.

Publication Details

Journal
Open PRAIRIE (South Dakota State University)
Published
2025-02-07
Primary Topic
Genetic Associations and Epidemiology
Type
article
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article

Session 2 : Creating a User-friendly Shiny App for Reproducible Two-Sample Mendelian Randomization Studies

Open PRAIRIE (South Dakota State University)
Genetic Associations and Epidemiology
article

Session 2 : Creating a User-friendly Shiny App for Reproducible Two-Sample Mendelian Randomization Studies

article en

Abstract

We present a Shiny app that supports and facilitates two-sample Mendelian randomization studies with genome-wide association study (GWAS) summary statistics. The proliferation of GWAS and the sharing of their marginal SNP association statistics have enabled researchers to address causal inference questions between two complex traits. Two-sample Mendelian randomization posits a causal relationship between a putative exposure and a putative outcome. Our Shiny app will enable researchers to input GWAS summary statistics for the putative outcome and putative exposure. The app supports diverse sensitivity analyses to assess the assumptions that underlie Mendelian randomization. To ensure computational reproducibility, the user can download a Rmarkdown file with all analysis code from our app. We also briefly discuss anticipated issues with app deployment.

Open PRAIRIE (South Dakota State University)
Gender equality
Openalex Percentile: Top 40%
Genetic Associations and Epidemiology
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