Breaking Rank Bottlenecks in Knowledge Graph Embeddings

Many knowledge graph embedding (KGE) models for link prediction use powerful encoders. However, they often rely on a simple hidden vector-matrix multiplication to score subject-relation queries against candidate object entities. When the number of entities is larger than the model's embedding dimension, which is often the case in practice by several orders of magnitude, we have a linear output layer with a rank bottleneck. Such bottlenecked layers limit model expressivity. We investigate both theoretically and empirically how rank bottlenecks affect KGEs. We find that, by limiting the set of feasible predictions, rank bottlenecks hurt the ranking accuracy and distribution fidelity of scores. Inspired by the language modelling literature, we propose KGE-MoS, a mixture-based output layer to break rank bottlenecks in many KGEs. Our experiments show that KGE-MoS improves ranking performance of KGE models on large-scale datasets at a low parameter cost.

Publication Details

Journal
ArXiv.org
Published
2025-06-27
Primary Topic
Advanced Graph Neural Networks
Type
article
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article

Breaking Rank Bottlenecks in Knowledge Graph Embeddings

ArXiv.org
Advanced Graph Neural Networks
article

Breaking Rank Bottlenecks in Knowledge Graph Embeddings

article en

Abstract

Many knowledge graph embedding (KGE) models for link prediction use powerful encoders. However, they often rely on a simple hidden vector-matrix multiplication to score subject-relation queries against candidate object entities. When the number of entities is larger than the model's embedding dimension, which is often the case in practice by several orders of magnitude, we have a linear output layer with a rank bottleneck. Such bottlenecked layers limit model expressivity. We investigate both theoretically and empirically how rank bottlenecks affect KGEs. We find that, by limiting the set of feasible predictions, rank bottlenecks hurt the ranking accuracy and distribution fidelity of scores. Inspired by the language modelling literature, we propose KGE-MoS, a mixture-based output layer to break rank bottlenecks in many KGEs. Our experiments show that KGE-MoS improves ranking performance of KGE models on large-scale datasets at a low parameter cost.

ArXiv.org
Openalex Percentile: Top 73%
Advanced Graph Neural Networks
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Breaking Rank Bottlenecks in Knowledge Graph Embeddings · ArXiv.org (2025) | TGRS Research Map | TGRS