An interpretable approach to automating the assessment of biofouling in video footage

Biofouling$\unicode{x2013}$communities of organisms that grow on hard surfaces immersed in water$\unicode{x2013}$provides a pathway for the spread of invasive marine species and diseases. To address this risk, international vessels are increasingly being obligated to provide evidence of their biofouling management practices. Verification that these activities are effective requires underwater inspections, using divers or underwater remotely operated vehicles (ROVs), and the collection and analysis of large amounts of imagery and footage. Automated assessment using computer vision techniques can significantly streamline this process, and this work shows how this challenge can be addressed efficiently and effectively using the interpretable Component Features (ComFe) approach with a DINOv2 Vision Transformer (ViT) foundation model. ComFe is able to obtain improved performance in comparison to previous non-interpretable Convolutional Neural Network (CNN) methods, with significantly fewer weights and greater transparency$\unicode{x2013}$through identifying which regions of the image contribute to the classification, and which images in the training data lead to that conclusion. All code, data and model weights are publicly released.