PhysiBoSS-Models: A database for multiscale models

PhysiBoSS is an open-source platform that integrates agent-based modeling of cell populations with intracellular stochastic Boolean networks, enabling multiscale simulations of complex biological behaviors. To promote model sharing and versioning, we present the PhysiBoSS-Models database: a curated repository for multiscale models built with PhysiBoSS. By providing a simple Python API, PhysiBoSS-Models provides an easy way to download and simulate preexisting models through tools such as PhysiCell Studio. By providing standardized access to validated models, PhysiBoSS-Models facilitates reuse, validation, and benchmarking, supporting research in biology.

Publication Details

Journal
ArXiv.org
Published
2025-08-07
Primary Topic
Gene Regulatory Network Analysis
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article
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article

PhysiBoSS-Models: A database for multiscale models

ArXiv.org
Gene Regulatory Network Analysis
article

PhysiBoSS-Models: A database for multiscale models

article en

Abstract

PhysiBoSS is an open-source platform that integrates agent-based modeling of cell populations with intracellular stochastic Boolean networks, enabling multiscale simulations of complex biological behaviors. To promote model sharing and versioning, we present the PhysiBoSS-Models database: a curated repository for multiscale models built with PhysiBoSS. By providing a simple Python API, PhysiBoSS-Models provides an easy way to download and simulate preexisting models through tools such as PhysiCell Studio. By providing standardized access to validated models, PhysiBoSS-Models facilitates reuse, validation, and benchmarking, supporting research in biology.

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Openalex Percentile: Top 51%
Gene Regulatory Network Analysis
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PhysiBoSS-Models: A database for multiscale models · ArXiv.org (2025) | TGRS Research Map | TGRS