BAGELS: Benchmarking the Automated Generation and Extraction of Limitations from Scholarly Text

In scientific research, ``limitations'' refer to the shortcomings, constraints, or weaknesses of a study. A transparent reporting of such limitations can enhance the quality and reproducibility of research and improve public trust in science. However, authors often underreport limitations in their papers and rely on hedging strategies to meet editorial requirements at the expense of readers' clarity and confidence. This tendency, combined with the surge in scientific publications, has created a pressing need for automated approaches to extract and generate limitations from scholarly papers. To address this need, we present a full architecture for computational analysis of research limitations. Specifically, we (1) create a dataset of limitations from ACL, NeurIPS, and PeerJ papers by extracting them from the text and supplementing them with external reviews; (2) we propose methods to automatically generate limitations using a novel Retrieval Augmented Generation (RAG) technique; (3) we design a fine-grained evaluation framework for generated limitations, along with a meta-evaluation of these techniques.

Publication Details

Journal
ArXiv.org
Published
2025-05-22
Primary Topic
Biomedical Text Mining and Ontologies
Type
article
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article

BAGELS: Benchmarking the Automated Generation and Extraction of Limitations from Scholarly Text

ArXiv.org
Biomedical Text Mining and Ontologies
article

BAGELS: Benchmarking the Automated Generation and Extraction of Limitations from Scholarly Text

article en

Abstract

In scientific research, ``limitations'' refer to the shortcomings, constraints, or weaknesses of a study. A transparent reporting of such limitations can enhance the quality and reproducibility of research and improve public trust in science. However, authors often underreport limitations in their papers and rely on hedging strategies to meet editorial requirements at the expense of readers' clarity and confidence. This tendency, combined with the surge in scientific publications, has created a pressing need for automated approaches to extract and generate limitations from scholarly papers. To address this need, we present a full architecture for computational analysis of research limitations. Specifically, we (1) create a dataset of limitations from ACL, NeurIPS, and PeerJ papers by extracting them from the text and supplementing them with external reviews; (2) we propose methods to automatically generate limitations using a novel Retrieval Augmented Generation (RAG) technique; (3) we design a fine-grained evaluation framework for generated limitations, along with a meta-evaluation of these techniques.

ArXiv.org
Openalex Percentile: Top 51%
Biomedical Text Mining and Ontologies
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BAGELS: Benchmarking the Automated Generation and Extraction of Limitations from Scholarly Text · ArXiv.org (2025) | TGRS Research Map | TGRS