A Review of Biotic Interactions and Taxon Names Found in globalbioticinteractions/usnm hash://md5/4281af68992fb5c77b285d367f363d17

Introduction Data Review and Archive Data review and archiving can be a time-consuming process, especially when done manually. This review report aims to help facilitate both activities. It automates the archiving of datasets, including Darwin Core archives, and is a citable backup of a version of the dataset. Additionally, an automatic review of species interaction claims made in the dataset is generated and registered with Global Biotic Interactions (J. H. Poelen, Simons, and Mungall 2014). This review includes summary statistics about, and observations about, the dataset under review: NMNH_Botany (US) - Version 1.4 https://collections.nmnh.si.edu/ipt/archive.do?r=nmnh_botany 2025-04-26T04:34:51.060Z NMNH Extant Specimen Records (USNM, US) - Version 1.92 https://collections.nmnh.si.edu/ipt/archive.do?r=nmnh_extant_dwc-a 2025-04-26T04:34:51.060Z NMNH Material Samples (USNM) - Version 1.76 https://collections.nmnh.si.edu/ipt/archive.do?r=nmnh_material_sample 2025-04-26T04:34:51.060Z nmnh_materialsample_test - Version 1.49 https://collections.nmnh.si.edu/ipt/archive.do?r=nmnh_materialsample_test 2025-04-26T04:34:51.060Z nmnh_occurrence_archive - Version 1.18 https://collections.nmnh.si.edu/ipt/archive.do?r=nmnh_occurrence_archive 2025-04-26T04:34:51.060Z Occurrence data of Afrotropical Mydidae (Insecta: Diptera: Asiloidea) - Version 1.5 https://collections.nmnh.si.edu/ipt/archive.do?r=afrotropical_mydidae 2025-04-26T04:34:51.060Z Occurrence data of Anasillomos (Diptera: Asiloidea: Asilidae) - Version 5.21 https://collections.nmnh.si.edu/ipt/archive.do?r=anasillomos 2025-04-26T04:34:51.060Z Occurrence data of Asilidae at Gobabeb, Namib Desert, Namibia (10 km radius) - Version 1.1 https://collections.nmnh.si.edu/ipt/archive.do?r=gobabebasilidae 2025-04-26T04:34:51.060Z Occurrence data of Mydidae at Gobabeb, Namib Desert, Namibia (10 km radius) - Version 1.1 https://collections.nmnh.si.edu/ipt/archive.do?r=gobabebmydidae 2025-04-26T04:34:51.060Z Occurrence data of Prytanomyia (Diptera: Asiloidea: Asilidae) - Version 1.20 https://collections.nmnh.si.edu/ipt/archive.do?r=prytanomyia 2025-04-26T04:34:51.060Z hash://md5/4281af68992fb5c77b285d367f363d17 For additional metadata related to this dataset, please visit https://github.com/globalbioticinteractions/usnm and inspect associated metadata files including, but not limited to, README.md, eml.xml, and/or globi.json. Methods The review is performed through programmatic scripts that leverage tools like Preston (Elliott et al. 2025), Elton (Kuhn, Poelen, and Leinweber 2025), Nomer (Salim and Poelen 2025), globinizer (J. Poelen, Seltmann, and Mietchen 2024) combined with third-party tools like grep, mlr, tail and head. Tools used in this review process tool name version preston 0.10.1 elton 0.15.9 nomer 0.5.13 globinizer 0.4.0 mlr 6.0.0 jq 1.6 yq 4.25.3 pandoc 3.1.6.1 The review process can be described in the form of the script below 1. # get versioned copy of the dataset (size approx. 4.78GiB) under review elton pull globalbioticinteractions/usnm # generate review notes elton review globalbioticinteractions/usnm\ > review.tsv # export indexed interaction records elton interactions globalbioticinteractions/usnm\ > interactions.tsv # export names and align them with the Catalogue of Life using Nomer elton names globalbioticinteractions/usnm\ | nomer append col\ > name-alignment.tsv or visually, in a process diagram. Review Process Overview You can find a copy of the full review script at check-data.sh. See also GitHub and Codeberg. Results In the following sections, the results of the review are summarized 2. Then, links to the detailed review reports are provided. Files The following files are produced in this review: filename description biblio.bib list of bibliographic reference of this review check-dataset.sh data review workflow/process as expressed in a bash script data.zip a versioned Preston (Elliott et al. 2025) archive of the data under review HEAD the digital signature of the data under review index.docx review in MS Word format index.html review in HTML format index.md review in Pandoc markdown format index.pdf review in PDF format indexed-citations.csv.gz list of distinct reference citations for reviewed species interaction claims in gzipped comma-separated values file format indexed-citations.html.gz list of distinct reference citations for reviewed species interactions claims in gzipped html file format indexed-citations.tsv.gz list of distinct reference citations for reviewed species interaction claims in gzipped tab-separated values format indexed-interactions-col-family-col-family.svg network diagram showing the taxon family to taxon family interaction claims in the dataset under review as interpreted by the Catalogue of Life via Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) indexed-interactions-col-kingdom-col-kingdom.svg network diagram showing the taxon kingdom to taxon kingom interaction claims in the dataset under review as interpreted by the Catalogue of Life via Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) indexed-interactions.csv.gz species interaction claims indexed from the dataset under review in gzipped comma-separated values format indexed-interactions.html.gz species interaction claims indexed from the dataset under review in gzipped html format indexed-interactions.tsv.gz species interaction claims indexed from the dataset under review in gzipped tab-separated values format indexed-interactions-sample.csv list of species interaction claims indexed from the dataset under review in gzipped comma-separated values format indexed-interactions-sample.html first 500 species interaction claims indexed from the dataset under review in html format indexed-interactions-sample.tsv first 500 species interaction claims indexed from the dataset under review in tab-separated values format indexed-names.csv.gz taxonomic names indexed from the dataset under review in gzipped comma-separated values format indexed-names.html.gz taxonomic names found in the dataset under review in gzipped html format indexed-names.tsv.gz taxonomic names found in the dataset under review in gzipped tab-separated values format indexed-names-resolved-col.csv.gz taxonomic names found in the dataset under review aligned with the Catalogue of Life as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-col.html.gz taxonomic names found in the dataset under review aligned with the Catalogue of Life as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-col.tsv.gz taxonomic names found in the dataset under review aligned with the Catalogue of Life as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-discoverlife.csv.gz taxonomic names found in the dataset under review aligned with Discover Life bee species checklist as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-discoverlife.html.gz taxonomic names found in the dataset under review aligned with Discover Life bee species checklist as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-discoverlife.tsv.gz taxonomic names found in the dataset under review aligned with Discover Life bee species checklist as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-gbif.csv.gz taxonomic names found in the dataset under review aligned with GBIF Backbone Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-gbif.html.gz taxonomic names found in the dataset under review aligned with GBIF Backbone Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-gbif.tsv.gz taxonomic names found in the dataset under review aligned with GBIF Backbone Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-itis.csv.gz taxonomic names found in the dataset under review aligned with Integrated Taxonomic Information System (ITIS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-itis.html.gz taxonomic names found in the dataset under review aligned with Integrated Taxonomic Information System (ITIS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-itis.tsv.gz taxonomic names found in the dataset under review aligned with Integrated Taxonomic Information System (ITIS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-mdd.csv.gz taxonomic names found in the dataset under review aligned with the Mammal Diversity Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-mdd.html.gz taxonomic names found in the dataset under review aligned with Mammal Diversity Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-mdd.tsv.gz taxonomic names found in the dataset under review aligned with M