On the ancestry and evolution of the extinct dire wolf

This repository contains data files and scripts used for the publication "On the ancestry and evolution of the extinct dire wolf". This includes: Supplementary_Tables: A single file with all supplementary tables (as tabs) referenced in the manuscript:S1: Sequencing library statistics for all ancient samples.S2: Reference assembly accessions used in studyS3: Alignment statistics for all ancient samplesS4: Iterative mapping and polishing statistics for paleogenome reconstructionS5: Gene annotation information for paleogenome reconstructionS6: Allele sharing statistics for residual reference bias assessmentS7: Mash distance metrics for genetic distanceS8: Short read dataset accessions used in studyS9: Mitochondrial genome accessions used in studyS10: Age estimates for nodes in phylogenetic treeS11: Summary of admixture methods and models dw_samps.hom.uniq.DP5.GQ10.VAF2.long-form: List of high confidence homozygous variants supported from both dire wolf specimens. mAenDir1.fa.gz: genome assembly for dire wolf generated using iterative mapping via Pilon.