Conformational Dynamics and Catalytic Backups in a Hyper-Thermostable Engineered Archaeal Protein Tyrosine Phosphatase

The following files contain simulation parameters and analysis details for the engineered PTP based on the DNA shuffling of Archaea PTPs, ShufPTP, and a TkPTP, an archaeal PTP used for comparison. Particularly, the files include simulations set up for MD and EVB simulations, an analysis of P-loop and IPD-loop dynamics described in the manuscript, and representative frames of the simulations. For a detailed description of the files please consult the README.txt.

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2025-03-24
DOI
https://doi.org/10.5281/zenodo.15074903
Primary Topic
Protein Tyrosine Phosphatases
Type
article
Field-Weighted Citation Impact
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article

Conformational Dynamics and Catalytic Backups in a Hyper-Thermostable Engineered Archaeal Protein Tyrosine Phosphatase

Zenodo (CERN European Organization for Nuclear Research)
Protein Tyrosine Phosphatases
article

Conformational Dynamics and Catalytic Backups in a Hyper-Thermostable Engineered Archaeal Protein Tyrosine Phosphatase

article en

Abstract

The following files contain simulation parameters and analysis details for the engineered PTP based on the DNA shuffling of Archaea PTPs, ShufPTP, and a TkPTP, an archaeal PTP used for comparison. Particularly, the files include simulations set up for MD and EVB simulations, an analysis of P-loop and IPD-loop dynamics described in the manuscript, and representative frames of the simulations. For a detailed description of the files please consult the README.txt.

Zenodo (CERN European Organization for Nuclear Research)
Uppsala University (SE), Georgia Institute of Technology (US)
Openalex Percentile: Top 52%
Protein Tyrosine Phosphatases
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